Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01454 ATGGATTCATCGAACACCACTTTGTTGACCAACCTACTGGTCTTCAACAACACCATTCAACAAGAGTTGATGAGGAGCGTGCATGTCTACCGTCAATTGAATGGAGAGGAAAGTGAAGTTGAAAGAGAGTTTTTGTTTTCAAAGAGTGGTTCCTATTTGGAAATGCAGGCTACCCCAATTCTCAGATTGTTGAAATTTCGTGTTTCTGAAGTTTGTGAAGGGTACCAAAGTGGAGTGTGGCTTTGTATCTTTGCGTTTCACGCCAATCACACACCTCAATTTCCCCACATTCCATCAATGTTGTTGGTCACGAGTAACCCAAAGCTTCAGACGATTCCAAACTTGCTTAATGATCTTCACATGATATACAAGTTGGACTGGAAGGAGGAAGACAAAGATATGCCACAAGACTCTACAGGGGAAGAATGGAAAGGAAACAACAATGATTGCCAACCATCACAAAAAGTCTTGCCTGTGTTTGATCAGGATCTCAATTGTCTTCCTTATGAAGAAGACGAGTCTGAGTTACCAGACAATGAGATAGATGCTGAAAGCTCACCAGGTTTGGTAGGAAAGAAAAAGAGGGCACCCAGTGACCATGTAGCAAAACTTGCTTTATCAGATTTGGTCAAGTACTTTGATATGCCAATTGTAGAAGCATCAAGAAATCTAAATGTTGGGCTTACTGTTCTCAAGAGAAAATGCAGAGAATTTGGTATTCCCCGCTGGCCTCATAGGAAGATCAAATCACTTGACTGTCTCATTCATGATCTTCAGGAAGAGGCAAAACACCAAGAATCGGAGGATAAGGCTGCGGCCATGGCAGTGACAAGGAGGCAAAGGATGTTAGAGAGTGAAAAGGAAAACATAGAAAAGAAACCCTTCATGGACATACAAAGTGAGACCAAGAGATTCAGACAGGATGTTTTCAAGAGAAGGCACAGAGCTAGAGCTATTGAAAAACAAAGTTCTACAGTATCCACCACTTAG 990 0.4172 MDSSNTTLLTNLLVFNNTIQQELMRSVHVYRQLNGEESEVEREFLFSKSGSYLEMQATPILRLLKFRVSEVCEGYQSGVWLCIFAFHANHTPQFPHIPSMLLVTSNPKLQTIPNLLNDLHMIYKLDWKEEDKDMPQDSTGEEWKGNNNDCQPSQKVLPVFDQDLNCLPYEEDESELPDNEIDAESSPGLVGKKKRAPSDHVAKLALSDLVKYFDMPIVEASRNLNVGLTVLKRKCREFGIPRWPHRKIKSLDCLIHDLQEEAKHQESEDKAAAMAVTRRQRMLESEKENIEKKPFMDIQSETKRFRQDVFKRRHRARAIEKQSSTVSTT* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01454 329 Coils Coil 248 268 - -
Rops1g01454 329 Pfam RWP-RK domain 204 251 IPR003035 -
Rops1g01454 329 Coils Coil 273 293 - -
Rops1g01454 329 PANTHER PROTEIN RKD4 58 321 IPR044607 GO:0003700
Rops1g01454 329 ProSiteProfiles RWP-RK domain profile. 186 271 IPR003035 -
Rops1g01454 329 MobiDBLite consensus disorder prediction 171 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01454 Rops-Chr1 32029692 32034741 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01454 19 329 AtRKD Transcription Factor Family AT4G35590 49.080 1.76e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Rops1g01454 RWP-RK 3.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01454 - - gmx:113001653 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01454 1 32029692 32034741 Rops1g01454 1 32029692 32034741 ECH