Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01448 ATGGGAGGCTTATTGCACTTTTTTGAATTCAATCAGGGGAGGATGGCCAAGAAAGTCCATGCTCATAAGAGACATCATGGCGGCCTGGAAGCTCCTCGAAATAGTCTAGATCTGCAAGTAGAAACATCTCAAAACTACTGCCCACAAGGAGAATTACCGTCCTATTATCAAGTAGAAGAAGACTGGTCAGAGAATAATCGTTATTCAAAAGCGGGTTCAATGAAAAAGCTGATCAATGAAGAGCTATCCAAACGATCAAGCAACAGACAAAATGCGCCAAGCCTTGTGGCAAGGTTGATGGGGATAGATATGATGCCAGTAGACACTAACTCTGTTGCTCCATCAGATAAAAGTGAAAATATGGGGAAGAAGTTTTCAAACAAGGGAATGAATGGAAGGGGTTCAGTTAGTTTTAATTCTTCTAGCCAGATAGAGTTTGATTCATTTTATGAAGACACAGATGATGATGATGGATGGAGCCGGAGTTTTGGAGAACCAAGGCCACGGGAGCATCCTCAGGAAGAGGAACTCCAGAAATTCAAGAAAGAGTTTGAAGCATATCAAGCAGCAAGGTTCCTGGAATGTTCAAAAGTTGCTGAAATTGGCAGTGTTTCTAGACTATCGCTTGTTCAAGAAAACCTGAACAAGGAAAAGGTGGCACATAATACAAGTTTACAGAGAGCAGCAACAGGGAAACTTGCAGAGCTTGACAGCCACTCATTTAAAAGAAAGCAACATGGCAGTGGTGGTTTAGAATATTGTGGTGACAGGATGGAGTTAATCTCAGCTATGCAAAGGAAAACCTTTCCTTCAAAGAGCAGAACTCTAAGTAGAGACTTTGAAGAGTCCTTGATGATGAAATCTTATGACAGATTAGACACATCTTCTTCTCCCACTCGGATAGTTATCTTGAAGCCTGGTCCTGATAGCATTTGCAGTGATGAAGAGAATTGGACCAGTTCATCAGGCACTTTATCAGGGAGAAATGACATTGAAGATTTTCTTGAGGAGGTGAAAGAACGTTTGAAATGTGAACTGCAAGGAAAAACTGTCAAAAAGGGTTCTGTGGTTCGAGGAAGTGAGATTGAGACACTTTACAATAAAAAACCATCTGATCCTAAACTTATAGCCCGTCATATAGTAAAGCAAGTCAGGGAAAGTGCGACTAGAGATGCTGACTCAAATATGGTTCGCTCGGAATCAACAAGATCACATGAAAGTGAAATGCAGTTCAATGGACCGAGTTTACCAGATTTTATCAGTAGAGATACCAGGAGGTTCTTGTCAGAGAGGCTAAGAAATGTTGTGAAAAGTGAAAGACTTGATGACATTCCTGAGGGGAACTCAAGATCACATGCATTAGACGATCACAGAGTTAGACTCAAACAGATAGGGGATACTTTGGAGTGTGCAAATGACTGGGAAATTTCAAAAGAGGAAACAGAAATACAAACAGGATCTTTCAGGCATGAACCAGATGACAACATATCGCTCCACAGGGAGTTGTCCCCTAGGAACCTTGTAAGATCCTTGTCTGCTCCTGTATCAAGATCAGGAACATCATTTGGAAAGCTTCTTCTAGAGGATCGCCACGTTTTAACTGGTGCTCATATTCGGAGGAAGCTTGAAGCTGTTGAAACTATGCCTATTGATGTTAAAAAAGGGAAAAAAGATAGATTTAATATCAAAGCAAGGGTCTCCAATTTTAGATATAGTCTTGCTCTAAGAGGAAGGCTTTTTGGCAAGAGGATTCAATCAATGGTAGAATCACATGGCAATGAATATGGTTCCATGGTGAGAGATGTCACGAGTGGACCAACAGTTCTCATGAACTATGGGGAGAGGCATGAGAACTCCACTGAGGTACCTCCTAGTCCTGCATCTGTGTGCAGCAGTGTTCATGAAGACTTCTTGAGGCGGACTGAATATTTAAGTCCAATATCAACTCCTGATGTGTCTTCAAGAGACGATATTGTTGTGCCCCAAGTTTTTAGAGATATCAGCTCGGGTTTAAATGAGCTTAGGAGACAACTCACTCAACTTGAATCTGGTGGTCCTGAGGACTTCACTATGAAACAGGAGCCTGTTGAGTCTGAAATGGTTCAATTAGAGGATCCAGCAGAATCTTACATTAGAGATCTACTTGTTGCTTCTGGTCTATACTTTGGTTCATGGGATAAATCTTTATTAAGAGGGGACACATTTGCAAAGCCTATTGGCAACTCTGTCTTTGAAGAAGTGGAAGAATCTCATAAAAAATTGGTCAAGGAGAATGATGGAAGTTCTTTAAAGGATTGTAATGAGAATAAGCTAGACCACAAGATTTTGCTTGATTTGTTAAATGAGGCACTTTCAGTTGTTCTTGGACCACCTTTGACATTGTCTAGATTCAGAAGGAAATTAAGCAACTTTTCCATGTTGCCACCACCTTGTGGAAAGGAACTGTTGAACTTAGTATGGGACATTATGCGTGTTTCTTTATATCCTCCATCTGACATATCTCTTCTTTCACTTGATAGTTTGGTGGCTCAACACCTGAGATCCATTCCCTGGTCTGGATTAATAAATGATGAGATCAATGTATTGGAAAGAGAGATAGAGTGTCTTATAACTGATGATCTGATTGAAGAACTTGCAAAGGATATCATATGCTCTAAGATGTTGTGA 2667 0.4061 MGGLLHFFEFNQGRMAKKVHAHKRHHGGLEAPRNSLDLQVETSQNYCPQGELPSYYQVEEDWSENNRYSKAGSMKKLINEELSKRSSNRQNAPSLVARLMGIDMMPVDTNSVAPSDKSENMGKKFSNKGMNGRGSVSFNSSSQIEFDSFYEDTDDDDGWSRSFGEPRPREHPQEEELQKFKKEFEAYQAARFLECSKVAEIGSVSRLSLVQENLNKEKVAHNTSLQRAATGKLAELDSHSFKRKQHGSGGLEYCGDRMELISAMQRKTFPSKSRTLSRDFEESLMMKSYDRLDTSSSPTRIVILKPGPDSICSDEENWTSSSGTLSGRNDIEDFLEEVKERLKCELQGKTVKKGSVVRGSEIETLYNKKPSDPKLIARHIVKQVRESATRDADSNMVRSESTRSHESEMQFNGPSLPDFISRDTRRFLSERLRNVVKSERLDDIPEGNSRSHALDDHRVRLKQIGDTLECANDWEISKEETEIQTGSFRHEPDDNISLHRELSPRNLVRSLSAPVSRSGTSFGKLLLEDRHVLTGAHIRRKLEAVETMPIDVKKGKKDRFNIKARVSNFRYSLALRGRLFGKRIQSMVESHGNEYGSMVRDVTSGPTVLMNYGERHENSTEVPPSPASVCSSVHEDFLRRTEYLSPISTPDVSSRDDIVVPQVFRDISSGLNELRRQLTQLESGGPEDFTMKQEPVESEMVQLEDPAESYIRDLLVASGLYFGSWDKSLLRGDTFAKPIGNSVFEEVEESHKKLVKENDGSSLKDCNENKLDHKILLDLLNEALSVVLGPPLTLSRFRRKLSNFSMLPPPCGKELLNLVWDIMRVSLYPPSDISLLSLDSLVAQHLRSIPWSGLINDEINVLEREIECLITDDLIEELAKDIICSKML* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01448 888 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 882 - -
Rops1g01448 888 MobiDBLite consensus disorder prediction 151 174 - -
Rops1g01448 888 Pfam Domain of unknown function (DUF4378) 709 877 IPR025486 -
Rops1g01448 888 Pfam DUF761-associated sequence motif 87 106 IPR032795 -
Rops1g01448 888 MobiDBLite consensus disorder prediction 155 174 - -
Rops1g01448 888 MobiDBLite consensus disorder prediction 386 416 - -
Rops1g01448 888 MobiDBLite consensus disorder prediction 386 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01448 Rops-Chr1 31971236 31976789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01448 74 884 TRM (TON1 Recruiting Motif) Superfamily AT2G17550 41.141 1.46e-153 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01448 - - gmx:100779720 1340.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01448 1 31971236 31976789 Rops1g01448 1 31971236 31976789 ECH