Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01440 ATGGCACCAGGGACTGATTTCACCTCTCATTCAGCTACAATGAGTGGGGGTGGGTGCCCAAAGGGAAGCAATAGTGAGAGTTCCATGGAGGATCAGAATGGTGATACGGTGGGGAATTTGAATCAGAATGTTGGGAAACCTCCAAGGGATCTTTCAGTTATGCGACATTGTAGCAGCTCTTCATGGTTGGTTGAACCGGAATCAAATATTAGTACTGTTGGATCGAAATCAAGCACAGAAGAAAAATCAGAGTTTTCACTTACATTGCGATCTGGAAGTTTTTCTGATAAAGGACCAAAGCAGTACATGGAGGATGAGTTCATATGTGTTGATATTCTTCATGAATGTGTTGGTCCAGAAGCAGACCTTCCTTCTCCAGCAGCATTTTATGGGGTATTTGATGGACATGGTGGTGTTGATGCAGCATCATTTATCAGAAAGAACATCCTTAAGTTTATAATCGAAGATTCCCATTTCCCATCTGGCATTAAGAAAGCAGTTAAGAGTTCATTTGTGAAGGCTGATCATGCACTTAGAGATGCCAGTTCTCTTGATAATTCTTCAGGCACCACCGCTCTAGTAGCCCTTGTGTTGGGAAGGGCCATGCTAATTGCCAATGCAGGAGATTCTCGTGCTGTATTAGGCAAAAGGGGCAGAGCCGTTGAACTTTCTAAAGACCATAAACCAAATTGCACTTCTGAAAGATTAAGAATTGAGAAACTGGGTGGTGTCATCTATGATGGATACCTCAATGGCCAACTATCAGTGGCACGTGCTCTTGGAGATTGGCACATCAAAGGTTCTAAAGGTGCTAAAAGCCCCTTAAGCTCTGAGCCTGAGCTGGAGGAGATTAACCTGACAGAAGAAGATGAGTTTTTGATAATGGGTTGTGATGGATTATGGGATGTGATGAGTAGCCAGTGTGCTGTTACAATGGTTAGGAGGGAACTCATGCAGCATAATGATCCCACAACATGTGCAAAAGTACTTGTTACTGAGGCCCTCCAACGCAACACATGTGACAATCTCACAGTTGTGGTGGTTTGTTTCTCCAAAGATCCACCTCCTAAGATTGAAATTCCTAGATCACATAGGAGGAGAAGTATTTCTGCTGAAGGCCTTGATCTTCTCAAGGGTGTCTTGAGTAATAGATGA 1155 0.4329 MAPGTDFTSHSATMSGGGCPKGSNSESSMEDQNGDTVGNLNQNVGKPPRDLSVMRHCSSSSWLVEPESNISTVGSKSSTEEKSEFSLTLRSGSFSDKGPKQYMEDEFICVDILHECVGPEADLPSPAAFYGVFDGHGGVDAASFIRKNILKFIIEDSHFPSGIKKAVKSSFVKADHALRDASSLDNSSGTTALVALVLGRAMLIANAGDSRAVLGKRGRAVELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHIKGSKGAKSPLSSEPELEEINLTEEDEFLIMGCDGLWDVMSSQCAVTMVRRELMQHNDPTTCAKVLVTEALQRNTCDNLTVVVVCFSKDPPPKIEIPRSHRRRSISAEGLDLLKGVLSNR* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01440 384 Gene3D - 70 354 IPR036457 -
Rops1g01440 384 FunFam Probable protein phosphatase 2C 22 75 353 - -
Rops1g01440 384 Pfam Protein phosphatase 2C 97 342 IPR001932 -
Rops1g01440 384 SUPERFAMILY PP2C-like 83 351 IPR036457 -
Rops1g01440 384 PANTHER PROTEIN PHOSPHATASE 2C 75 348 IPR015655 GO:0004722|GO:0006470
Rops1g01440 384 ProSiteProfiles PPM-type phosphatase domain profile. 90 350 IPR001932 -
Rops1g01440 384 CDD PP2Cc 90 350 IPR001932 -
Rops1g01440 384 SMART PP2C_4 80 348 IPR001932 -
Rops1g01440 384 MobiDBLite consensus disorder prediction 1 46 - -
Rops1g01440 384 MobiDBLite consensus disorder prediction 1 51 - -
Rops1g01440 384 ProSitePatterns PPM-type phosphatase domain signature. 129 137 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01440 Rops-Chr1 31930625 31933917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01440 74 382 PP2C-type Phosphatase Gene Family AT3G51470 77.994 1.07e-178 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01440 K14803 - gmx:100786416 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01440 1 31930625 31933917 Rops1g01440 1 31930625 31933917 ECH