Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01439 ATGCCAAGGGTCATTTTTGCCCATAAGAACAATGAGTGTGCCCATGACCCCAGGTTCTCTACGATGCTAATTGTCATGCTTTGCTCCTACTTTTGGCTCCTTCTTCATACACATCTTATCTTGTCAATCTACCAGGCAATTCATCCAATCATGATTAGAATTTGGCTCTTGGCTTTAATGGTTCTCTCCAATGGATTCTGGTCAACTGGGGCTGACATGCATAATTCCACAATACCTGATTCTGTAAATATTGGGGCTCTCTTTTCTTTCAATACCAGTGTTGGTAGAATCATAAGAATTGCTATAGAAGCTGCAATTGATGATGTAAATAAGGATCCAAATATTCTTGGCAAGACCAAGCTGAAGCTCTCACTTCAAGAAGATTCTAAATACAGAGGTTTTCTAAGCATTGCTGAGGTTTTGCAGGTCATGGCAAGACACACTGTGGCAATAATTGGCCCCCATAGCTCTGTAACAGCTCATGTCATAACTCATATTGCAAATGAGCTCCAAGTTCCTCTGCTGTCATTTTCTGCTTTGGATCCCACCCTTTCTTCACTTCAATTCCCATTCTTTGTTAGGACTTGTCACAGTGATCTTTATCAAATGACTGCAATAGCAGACTTTGTTGACTACTATGGGTGGAAGGAAGTTATTGCTGTCTATTTTGATGATGATAATGGGAGGAATGGAATTGGCGCATTAGGTGATAAGCTTGCTGAGAGACGTTGCAGGATCTCATATAAAGCAGCTATGAGCCCTGAAGCAACTACAGAGGAGATTACAAATGTGCTTGTTCAGGTAGCTCTTGCAGAATCACGGGTTATAGTTGTTCATGCCAACACTGTTTTTGGCCCCAAGGTGTTTAGTGTTGCAAAGAATCTTGGGATGATGGGAACTGGGTATGTCTGGATAGCCACTGCTTTTCTCTCTGCTCTGATTGATATAAATAATCCCCTCCCTCCAGATACTATGGATGAAATTCAAGGGGTTATTACACCACGTGTGTACACACCAGATTCAGAGCTCAAAAGAAGATTTGTTGCTAGGTGGAAAAACTTGACTAGTGGAGATACTGCTAATGGCCCCCTTGGAATGAGTTTTTTATCTCTCTATGCATACGATACTATTTACGTGCTTGCTCATGCACTTGATGCATTTTTCAAGCAAGGGAACCGAATTACATTCTCAAAAGATTCCAAGTTATCGGTACTACATGGAGACAACTTGCATCTTGAAGCTTTGAACATCTTTGATGAAGGAAAGTTGTTGCGTAGAAACATTTATGAGGTTAACATGACTGGTGTAACAGGCACGTTCAAGTATACATCTGATGGAAGCCTTGTTAATCCAGCATATGAAATTATCAATGTCGTTGGAACAGGGTCTCGGAGGATTGGTTATTGGTCTAATTACTCTGGATTATCAGTTGTTCCCCCAGAAGCTCTTTATTCCAAACCAGCCAATCGTTCCAGGGCAAATCAGAAGCTATTCCCTGTGATTTGGCCTGGAGACACAGACCAGAAGCCTCGTGGTTGGGTTTTTCCAAACAGTGGAAGGCTCTTAAAAATTGGAGTACCAAAAAGTGTTAGTTACCATGAATTTGTCTCACAAGTACCAGGCACTGATACATTTCAGGGATTCTGCATTGATGTGTTTCTTTCTGCAGTGAACCTGTTGCCTTATGCTGTCCCCTATAAGTTTATCCCTTATGGCGATGGTAAGAACAATCCTAGTGCCACTGAGCTTGTCCGTCTGATCACAACGGGTGAATTTGATGGTGCAGTTGGTGACATTGCAATTACTACAGAAAGAACAAAGATGGTGGACTTTACTCAGCCTTATATCGAGTCTGGTCTTGTGGTAGTAGCTCGTGTTAAGGAGTCAGAATCCAGTGCCTTGGCCTTTTTGGCCCCATTTACGCCAAGGATGTGGTTTGTTACAGCTGTTTTTTTCATACTAGTGGGAACTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAATTTAGAGGACCACCCAAAAAGCAAGTAGTTACTATTTTATGGTTTAGTTTTTCAACCATGTTCTTCTCCCACAGGGAAAATACAGTGAGCACACTTGGTCGCTTTGTGCTGCTTATATGGTTATTTGTAGTTCTTATAATTAACTCAAGTTACACGGCAAGCCTAACCTCAATCCTCACAGTGCAGCAGCTTTCTTCGCCCATTAAAGGCATTGAAAGTTTAGTAAATAGCAAAGAACCTATTGGTTACACACAGGGTTCTTTTGCTAAAAATTATTTAATTCAGGAAATTGGTATTGATGAGTCCAGGCTTGTTCCTTTAAAAACACCTGAAGAAATTGCTAGAGCACTGAAAAATGGTCCCCAGAATGGTGGTGTTGCTGCTTACATTGAGGAGCGTGCCTACATTGACATCTTCCTTTCAAGCCGGTGTGAATATACTGTTGTAGGTCAAGAGTTCACCAGAAACGGTTGGGGATTTGCCTTTCCTCGAGACTCGCCATTAGCAATTGACCTGTCAACTGCCATTTTGCAACTGACAGACAATGGAGATTTACAAAGGATACATGACAAATGGCTTTTGAGTAGTGCATGCTTATCACAAGGTGCAAAGCTTGAAGTGGAGAGACTCAAACTTAAAAGCTTCTGGGGCCTCTATGTAATCTGTGGATCAGCCTGCTTGCTTGCTCTATTCATATATCTCATACAATTGATGAGGCAGTACAGCAAGCACTACTCAGAGGAACGCGATATTAGTGTCCAAGGCTCAAGTTCAGGATCTACACGTCTAAGGACTTTCCTTACATTTGTAGATGAAAAAGAAAAGTCTGTGAAGAGCCGTTCCAAGAGAAGGAAAATGGAGAGGATCTCATACAGAGGTAATGAGGAAGGATCATCATCCATCAACTCCAATAATGGATATGCTCGGTCATCTACATACAGAAGTGATTGTACTAATGAAGTCTAA 2973 0.4151 MPRVIFAHKNNECAHDPRFSTMLIVMLCSYFWLLLHTHLILSIYQAIHPIMIRIWLLALMVLSNGFWSTGADMHNSTIPDSVNIGALFSFNTSVGRIIRIAIEAAIDDVNKDPNILGKTKLKLSLQEDSKYRGFLSIAEVLQVMARHTVAIIGPHSSVTAHVITHIANELQVPLLSFSALDPTLSSLQFPFFVRTCHSDLYQMTAIADFVDYYGWKEVIAVYFDDDNGRNGIGALGDKLAERRCRISYKAAMSPEATTEEITNVLVQVALAESRVIVVHANTVFGPKVFSVAKNLGMMGTGYVWIATAFLSALIDINNPLPPDTMDEIQGVITPRVYTPDSELKRRFVARWKNLTSGDTANGPLGMSFLSLYAYDTIYVLAHALDAFFKQGNRITFSKDSKLSVLHGDNLHLEALNIFDEGKLLRRNIYEVNMTGVTGTFKYTSDGSLVNPAYEIINVVGTGSRRIGYWSNYSGLSVVPPEALYSKPANRSRANQKLFPVIWPGDTDQKPRGWVFPNSGRLLKIGVPKSVSYHEFVSQVPGTDTFQGFCIDVFLSAVNLLPYAVPYKFIPYGDGKNNPSATELVRLITTGEFDGAVGDIAITTERTKMVDFTQPYIESGLVVVARVKESESSALAFLAPFTPRMWFVTAVFFILVGTVVWILEHRVNDEFRGPPKKQVVTILWFSFSTMFFSHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLVNSKEPIGYTQGSFAKNYLIQEIGIDESRLVPLKTPEEIARALKNGPQNGGVAAYIEERAYIDIFLSSRCEYTVVGQEFTRNGWGFAFPRDSPLAIDLSTAILQLTDNGDLQRIHDKWLLSSACLSQGAKLEVERLKLKSFWGLYVICGSACLLALFIYLIQLMRQYSKHYSEERDISVQGSSSGSTRLRTFLTFVDEKEKSVKSRSKRRKMERISYRGNEEGSSSINSNNGYARSSTYRSDCTNEV* 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01439 990 Pfam Receptor family ligand binding region 101 460 IPR001828 -
Rops1g01439 990 SUPERFAMILY Periplasmic binding protein-like II 499 864 - -
Rops1g01439 990 Gene3D - 198 475 - -
Rops1g01439 990 FunFam Glutamate receptor 633 763 - -
Rops1g01439 990 SUPERFAMILY Periplasmic binding protein-like I 78 514 IPR028082 -
Rops1g01439 990 PIRSF IGluLR_plant 49 987 IPR017103 -
Rops1g01439 990 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 82 940 IPR015683 -
Rops1g01439 990 Gene3D - 100 450 - -
Rops1g01439 990 SMART GluR_14 523 864 IPR001320 GO:0015276|GO:0016020
Rops1g01439 990 MobiDBLite consensus disorder prediction 947 990 - -
Rops1g01439 990 FunFam Glutamate receptor 759 866 - -
Rops1g01439 990 Gene3D - 795 869 - -
Rops1g01439 990 Gene3D - 520 632 - -
Rops1g01439 990 Gene3D - 633 761 - -
Rops1g01439 990 Pfam Bacterial extracellular solute-binding proteins, family 3 542 862 IPR001638 -
Rops1g01439 990 CDD PBP1_GABAb_receptor_plant 83 479 IPR044440 -
Rops1g01439 990 CDD GluR_Plant 522 862 - -
Rops1g01439 990 Pfam Ligand-gated ion channel 863 894 IPR001320 GO:0015276|GO:0016020
Rops1g01439 990 FunFam Glutamate receptor 517 633 - -
Rops1g01439 990 MobiDBLite consensus disorder prediction 962 990 - -
Rops1g01439 990 FunFam Glutamate receptor 198 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01439 Rops-Chr1 31917935 31922709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01439 55 963 Ion Channels AT3G51480 58.022 0.0 1127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01439 K05387 - gmx:100793320 1537.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01439 1 31917935 31922709 Rops1g01439 1 31917935 31922709 ECH