Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01438 ATGAAGTTTCGCGTTTCAATTTCTCCGTTATTGTTAATCGCGTTCTTCTTCTTGTTCTTGTTATTCATAATCTTGAGCTGCAACGCTGATGTTTCATCCAACTCTCAATCCCAGCTTTCGCTTCTCCCCAACTCAAACGCAAACGCAAACGCGGTTTCTCCCTCTCTTCTCTCTCTTCCACCTTCAGTTCCTAATAAACCTGCTACGGTACTGATTGCTGCCCTAGATGGCACTATTTATCTCGTGGATAGTGTTTCTGGGAGGGTCATTTGGTCTTTTCCAACTGGGTCCCCGATCTATCATCATTCATATCAAGCATCCATCAATACCAATTGCAATGAATCTGAACTCATCGAATGTGGAGATGACTGGGAACTAATCATTCACGACACCCACTTTGGTAAAACGAGACTCTCTGAATCTGTTGCTGATTATGTTGCTTTTACACCTACTGTGTCAAAAGATGGGGCTGTTATACTTGGATCCAAAACAAGTACTATGTTTGAAGTGGATGCTAAAACTGGGAGGCTCATTAGAAGCTACGGTGCTGCTGATTTTGATAGTGCTGCTGCTTCTTCTTCTACTGCAGTGTGGAGTGGTGGTGGGAAGGGTGTTACTAGTGTTGTCAGTGTAATGAATAATGAGCTTGCTGATCCTGCAAAGCTGAATTTACCGGAGTTCTTGCTCAAGATTATTAGGACTGATTATTTTTTACAATCTGTTGGTCCGGGATCAGGAACAGTGTTGTGGACTATGGCAGTCGCTGAATTTAAGGCTGTATTACTTTGCCAACATGATGAAAATCCTTCTGATTGTGGCAGCGGCTTGGATTTTGCTATGCCATATGCATGTCAAGACAGAAAACTGAAAGAAGTCTACCGCCAGAGGAAGAATGTTCTGTTAGAACCTGTTAACCCTGAAAGATTACCTGGGGCTTATCAAGGGAATGATAACCTCCCAATGCCTACTTCGGATCTGATGCATCCACCATGGCCGAATTTTGATAGATTACCCCCTGGTCATGATGGTAATATGATTGTTCCTTGGCACATGCCAAATTCTTTGCTATCAAAAATCATCCTCAATGACAGTAATAATAAGACAGCTTTGGCCCCTTGGCCTCCCATGGAGAACACTGCACCAGGGGGATCTTTGCCACCAAATTTCAGCTTCAATGACAGTAATGATGATACAACTTTGGGCCATCGGCCTCCTATGAATAACACTGCACCTGTGGGATCTTTGCTCCCTCAGCAGCCAAAAAGCGGCTTCAATGTCAGTAATGATATCGTAACTGTGGGCCCTCGGCCTCCTATGGAGACCACTACACCACGACAAGTTTATCTGAAAAGGGTGATAATATCAATACCTATCATATTTGTCATTTTCGTCGTCAGCATTGTCTTCAGAAAGCAGCCTCCAGTGGTTAAAAATCAAGTTATAGTGAAGGACCAAATCAGTGAGTCAGTTTTAAAGAGCTCGCCTCCTCCTAAGAAAAAGAGAGCACGCAAGTCAGGAAAAAACAATATCATTGTTGACAAACAGGATAAGCATCTGTCATCAGCTGACGAGGATATACTGACACAAAAGGAAACTGAAAATGAAGCATGGTTGCAATTTAATAAAGTTGATGGACGCAGGATAGGTAAACTATTAGTATCAAATAAAGAAATTGCTATGGGAAGCAATGGTACCATTGTCCTTGAGGGGATATATGAAGGCCGGGCAGTTGCTGTCAAGCGTCTTGTCCAGGCTCATCATGATGTAGCTCACAAAGAAATCCAAAATCTCATTGCATCTGATTGCCATCCAAACATTGTACGATGGTATGGGGTTGAATACGATCATGATTTTGTTTATCTTGCTCTGGAGCGCTGTACATGCAACTTGGATGATTTGATTCATATTTATTCGGATATAACGGAAAACCCGGTGTTTGGCAAGGAGCAAGCTTCTAAACTTTTTCAGATGGAGACAGGGAGGGATGATATGCAATATCTGTGGAAATCAAATGGCTATCCATCACCTCTATTACTGAAATTGATGAGGGATGTAGTTTCGGGGCTTGTTCATTTGCATGAACTGGGAATAATACACAGGGATTTGAAACCCCAAAATATTTTGATAATCAAGGAAAGATCAGTATGTGCAAAGCTTTCTGATATGGGGATCAGCAAACGCCTTCTTGAAGATATGTCTTCTTTGGGACATAGTGCTACTGGCTGTGGCAGTTCAGGTTGGCAAGCACCAGAGCAGCTTGTTCAAGGACGCCAAACACGGGCTGTGGATTTATTTAGTTTAGGTTGTGTCCTCTTTTTTTGCATGACTGCAGGAAGACATCCATTTGGAGAACGTCTTGAGCGTGATGTCAATATTGTGAAAAATCAAAAGGATCTTTTCTTATTGGAGCTCATTCCTGAAGCTCAAGATCTTATTTCTTGTTTATTAAACCCCGACCCTGATCTAAGGTCAAAGGCGATCGAAGTATTGCACCATCCTCTTTTTTGGAGTTCCGAGATGAGACTTTCATTTCTTCGTGACGTCAGTGACCGGGTGGAACTTGAAGATAGAGAAACCAATTCTGATCTTTTGAAGGCATTAGAAAGCATTGCTCCAGTGGCTTTAGGTACAAAATGGGATGAAAAGATGGAACCGGCTTTCATTACTAACATTGGTCGTTACCGGCGATATAAATTTGACAGTGTTCGAGACTTGTTGAGGGTCATGAGAAACAAGCTAAATCATTATAGAGAACTGCCTCAAGAAATCCAGGAATTGGTAGGACCTGTTCCAGAAGGATTCAACGAATACTTTGCGAGTCGATTCCCAAGGCTCTTGATTGAAGTGTACAAATTTATCTGCAAGTATTGCAAGGATGATGAATGTTTTCAAAGGTATTTTAGAGAACATTGA 2913 0.4198 MKFRVSISPLLLIAFFFLFLLFIILSCNADVSSNSQSQLSLLPNSNANANAVSPSLLSLPPSVPNKPATVLIAALDGTIYLVDSVSGRVIWSFPTGSPIYHHSYQASINTNCNESELIECGDDWELIIHDTHFGKTRLSESVADYVAFTPTVSKDGAVILGSKTSTMFEVDAKTGRLIRSYGAADFDSAAASSSTAVWSGGGKGVTSVVSVMNNELADPAKLNLPEFLLKIIRTDYFLQSVGPGSGTVLWTMAVAEFKAVLLCQHDENPSDCGSGLDFAMPYACQDRKLKEVYRQRKNVLLEPVNPERLPGAYQGNDNLPMPTSDLMHPPWPNFDRLPPGHDGNMIVPWHMPNSLLSKIILNDSNNKTALAPWPPMENTAPGGSLPPNFSFNDSNDDTTLGHRPPMNNTAPVGSLLPQQPKSGFNVSNDIVTVGPRPPMETTTPRQVYLKRVIISIPIIFVIFVVSIVFRKQPPVVKNQVIVKDQISESVLKSSPPPKKKRARKSGKNNIIVDKQDKHLSSADEDILTQKETENEAWLQFNKVDGRRIGKLLVSNKEIAMGSNGTIVLEGIYEGRAVAVKRLVQAHHDVAHKEIQNLIASDCHPNIVRWYGVEYDHDFVYLALERCTCNLDDLIHIYSDITENPVFGKEQASKLFQMETGRDDMQYLWKSNGYPSPLLLKLMRDVVSGLVHLHELGIIHRDLKPQNILIIKERSVCAKLSDMGISKRLLEDMSSLGHSATGCGSSGWQAPEQLVQGRQTRAVDLFSLGCVLFFCMTAGRHPFGERLERDVNIVKNQKDLFLLELIPEAQDLISCLLNPDPDLRSKAIEVLHHPLFWSSEMRLSFLRDVSDRVELEDRETNSDLLKALESIAPVALGTKWDEKMEPAFITNIGRYRRYKFDSVRDLLRVMRNKLNHYRELPQEIQELVGPVPEGFNEYFASRFPRLLIEVYKFICKYCKDDECFQRYFREH* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01438 970 Gene3D Transferase(Phosphotransferase) domain 1 665 837 - -
Rops1g01438 970 Gene3D KEN domain 838 970 IPR038357 -
Rops1g01438 970 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Rops1g01438 970 Pfam Protein kinase domain 555 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01438 970 PANTHER IRE1-RELATED 138 969 IPR045133 GO:0004521|GO:0004674|GO:0030968
Rops1g01438 970 SMART serkin_6 552 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01438 970 Gene3D - 37 266 IPR015943 GO:0005515
Rops1g01438 970 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 544 624 - -
Rops1g01438 970 ProSiteProfiles Protein kinase domain profile. 552 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01438 970 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 839 970 - -
Rops1g01438 970 Gene3D Phosphorylase Kinase; domain 1 540 624 - -
Rops1g01438 970 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 69 210 IPR011047 -
Rops1g01438 970 SUPERFAMILY Protein kinase-like (PK-like) 552 851 IPR011009 -
Rops1g01438 970 SMART PGNneu 900 954 - -
Rops1g01438 970 Pfam PQQ enzyme repeat 70 99 IPR002372 -
Rops1g01438 970 Pfam Ribonuclease 2-5A 841 967 IPR010513 GO:0004540|GO:0006397
Rops1g01438 970 CDD RNase_Ire1 839 967 - -
Rops1g01438 970 SMART ire1_9 150 182 IPR018391 -
Rops1g01438 970 SMART ire1_9 61 94 IPR018391 -
Rops1g01438 970 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 660 837 - -
Rops1g01438 970 ProSiteProfiles KEN domain profile. 838 969 IPR010513 GO:0004540|GO:0006397
Rops1g01438 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 697 709 IPR008271 GO:0004672|GO:0006468
Rops1g01438 970 MobiDBLite consensus disorder prediction 490 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01438 Rops-Chr1 31910476 31917549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01438 578 834 MAP Kinase Kinase Kinase AT3G06030 26.437 1.02e-21 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Rops1g01438 Pkinase 1.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01438 K08852 - gmx:100785363 1091.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01438 1 31910476 31917549 Rops1g01438 1 31910476 31917549 ECH