Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01434 ATGACACGCACGCTGAGAATTCTCCAATCAACGGAAAACTCCAGCGCCGTGGTAGCGGCGGCGCCGCCGCCGGAGGCGGTGGCTTTGGAGTCAGACTTCGTGGTGATTCTCGCAGCTTTGCTCTGCGCCCTTATATGCGTGGTGGGACTCATCGCCGTCGCGAGGTGCGCGTGGCTCCGGCGAGGCCCCGTTGCCGGCGGGAATTCACCCCGGCAAGCTCTGGCGAACAAGGGGCTGAAGAAGAAGGTGTTGCAGTCGTTGCCGAAGTTTGCTTACATGGACAGCAACCCGAGCAAGTGGGTGGCGACGTCGGAATGCGCGATTTGCCTGGCGGAGTTCGCCGCCGGCGACGAGATCCGGGTGTTGCCGCAGTGTGGTCACGGGTTCCACGTGGGATGCATAGACACGTGGCTTGGGTCCCACTCTTCTTGCCCTTCTTGTCGGCAGGTTCTGGCGGTGGCGAGGTGCCAGAAGTGCGGGCGGTTCCCGGCGGCGAACGGCGGAGCAGCCACCAGCATGGCGGCTAGTGAACCGGAGTTAAAATCAAGAGAAGATGACAATGCTGTTGCTGCTAATAATAATAGCGGCGGTGTTGATGTTAGTGGTAGCAGTAACATGGGACATCATAGCCACAATGTAATGAACAGTGGGTTCTTGCCATGA 663 0.5958 MTRTLRILQSTENSSAVVAAAPPPEAVALESDFVVILAALLCALICVVGLIAVARCAWLRRGPVAGGNSPRQALANKGLKKKVLQSLPKFAYMDSNPSKWVATSECAICLAEFAAGDEIRVLPQCGHGFHVGCIDTWLGSHSSCPSCRQVLAVARCQKCGRFPAANGGAATSMAASEPELKSREDDNAVAANNNSGGVDVSGSSNMGHHSHNVMNSGFLP* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01434 220 MobiDBLite consensus disorder prediction 187 220 - -
Rops1g01434 220 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Rops1g01434 220 SUPERFAMILY RING/U-box 84 153 - -
Rops1g01434 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 153 IPR013083 -
Rops1g01434 220 SMART ring_2 106 147 IPR001841 -
Rops1g01434 220 Pfam Ring finger domain 105 148 IPR001841 -
Rops1g01434 220 CDD RING-H2_EL5-like 105 148 - -
Rops1g01434 220 FunFam E3 ubiquitin-protein ligase ATL6 68 154 - -
Rops1g01434 220 SMART FANCL_C_2 102 156 - -
Rops1g01434 220 MobiDBLite consensus disorder prediction 166 220 - -
Rops1g01434 220 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 17 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01434 Rops-Chr1 31850554 31851394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01434 28 186 C3H Transcription Factor Family AT1G20823 62.941 1.81e-64 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01434 - - gmx:100787383 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01434 1 31850554 31851394 Rops1g01434 1 31850554 31851394 ECH
Rops1g01434 1 31850554 31851394 Rops10g01032 10 21912902 21913836 ECH