Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops1g01434 | ATGACACGCACGCTGAGAATTCTCCAATCAACGGAAAACTCCAGCGCCGTGGTAGCGGCGGCGCCGCCGCCGGAGGCGGTGGCTTTGGAGTCAGACTTCGTGGTGATTCTCGCAGCTTTGCTCTGCGCCCTTATATGCGTGGTGGGACTCATCGCCGTCGCGAGGTGCGCGTGGCTCCGGCGAGGCCCCGTTGCCGGCGGGAATTCACCCCGGCAAGCTCTGGCGAACAAGGGGCTGAAGAAGAAGGTGTTGCAGTCGTTGCCGAAGTTTGCTTACATGGACAGCAACCCGAGCAAGTGGGTGGCGACGTCGGAATGCGCGATTTGCCTGGCGGAGTTCGCCGCCGGCGACGAGATCCGGGTGTTGCCGCAGTGTGGTCACGGGTTCCACGTGGGATGCATAGACACGTGGCTTGGGTCCCACTCTTCTTGCCCTTCTTGTCGGCAGGTTCTGGCGGTGGCGAGGTGCCAGAAGTGCGGGCGGTTCCCGGCGGCGAACGGCGGAGCAGCCACCAGCATGGCGGCTAGTGAACCGGAGTTAAAATCAAGAGAAGATGACAATGCTGTTGCTGCTAATAATAATAGCGGCGGTGTTGATGTTAGTGGTAGCAGTAACATGGGACATCATAGCCACAATGTAATGAACAGTGGGTTCTTGCCATGA | 663 | 0.5958 | MTRTLRILQSTENSSAVVAAAPPPEAVALESDFVVILAALLCALICVVGLIAVARCAWLRRGPVAGGNSPRQALANKGLKKKVLQSLPKFAYMDSNPSKWVATSECAICLAEFAAGDEIRVLPQCGHGFHVGCIDTWLGSHSSCPSCRQVLAVARCQKCGRFPAANGGAATSMAASEPELKSREDDNAVAANNNSGGVDVSGSSNMGHHSHNVMNSGFLP* | 221 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops1g01434 | 220 | MobiDBLite | consensus disorder prediction | 187 | 220 | - | - | |
Rops1g01434 | 220 | ProSiteProfiles | Zinc finger RING-type profile. | 106 | 148 | IPR001841 | - | |
Rops1g01434 | 220 | SUPERFAMILY | RING/U-box | 84 | 153 | - | - | |
Rops1g01434 | 220 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 67 | 153 | IPR013083 | - | |
Rops1g01434 | 220 | SMART | ring_2 | 106 | 147 | IPR001841 | - | |
Rops1g01434 | 220 | Pfam | Ring finger domain | 105 | 148 | IPR001841 | - | |
Rops1g01434 | 220 | CDD | RING-H2_EL5-like | 105 | 148 | - | - | |
Rops1g01434 | 220 | FunFam | E3 ubiquitin-protein ligase ATL6 | 68 | 154 | - | - | |
Rops1g01434 | 220 | SMART | FANCL_C_2 | 102 | 156 | - | - | |
Rops1g01434 | 220 | MobiDBLite | consensus disorder prediction | 166 | 220 | - | - | |
Rops1g01434 | 220 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 17 | 160 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops1g01434 | Rops-Chr1 | 31850554 | 31851394 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops1g01434 | 28 | 186 | C3H Transcription Factor Family | AT1G20823 | 62.941 | 1.81e-64 | 196 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops1g01434 | - | - | gmx:100787383 | 318.931 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops1g01434 | 1 | 31850554 | 31851394 | Rops1g01434 | 1 | 31850554 | 31851394 | ECH | |
Rops1g01434 | 1 | 31850554 | 31851394 | Rops10g01032 | 10 | 21912902 | 21913836 | ECH |