Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01424 ATGAGTGATGCAAAAGAAAACGAGGAATCTGGCCAGGGGGTGCCCTTGGCTGTGGAAGAAAACCAGCAATTGGTTGATGCACAGGTTGAAGTTCAACCTGAAGTTGCCTCTGCTCCTGTTACAGTAGAGGAAAATTCAAATCATGTTGAAAATGGGAAGGCAGAGGCTGTCTCAGAAGGCATTCAGCAAGAAGTTGCATCTGCCGCAGAGCCACCTTCTGAGGATAAAAATGAGAAACATGAGGCAGTTTCAGAAGGCATTTCACAAGAAGTTGTTAATAGTACTCATCACTTGGTCCCAGTAGAGGCTGATGCTCGGGTTTTGAATACAACCGAGTGTGAAGAAGCTTCTGATGCCAAGGTGGCAGCTGGAGAATTTCCTCAGAGTAATACAAGTGTTGAGAAGGATGATAATGTTCATCAAAATAGTGTTGAGACGGATGATAATGTTCATCAAAATAGTGTTGGGAAGGATGATAATGTTCATCAAAATAGTGTTGAGAGTGTTGATAATGTTCGTCCGAATAGTGTTGGTGATGTGGAAACAGCGGTGGAGGTGAAGCCTGAAGTTTGTGAGGTGACTGATAGTAAAACTTGTGATGTTGGTGACCCCATGCCCTCAAGTCATAATGAGCCTACAACACCGCAACCTGCCCCTGCTGACACAAAACCTGAAATCAAGAATGTATTAGAAGTTGAGAATAAGGCCAATGAAAAGCAAGCTGCTGAACCTGCAGATAATGGGAATTCAAACTCAAAGCACATGTGTTTCTTGGATGCTGATCATTGTTATGATGGTAATGAGTCAGGAACGGATGAGGAGCAATCAGCTTTTATGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGCATGGAATTCAAACCTCCCAAGTTTTATGGGGAAGGACTTAATTGTCTTAAGTTATGGAGAGCTGTAACAAGATTGGGTGGCTATGATAAGGTAACCTCATGTAAGTTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACTACAGTTTCATGGACTTTTCGGGGATTTTATGAGAAGGCCCTTCTTGATTATGAAAGGCATAAAATAAAAGGTGGCGAGCTGAATGTGCCTATTGCTTCCCATCCAGAGCCTATGAATATTGAAAATCAGGCTTCAGCATCAGGTAGAGCCCGGAGAGATGCTGCAGCACGAGCTATGCAGGGTTGGCACTCTCAACGTCTCCTTGGCAATGGTGAAGTTAGTGACCCAATTATTAAGGATAGGAATTCTGTGTCCGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATTTACTTAAACGTAAGAAACCGTCTTATATGGATAATGCAGTCAAAGCAGCACGCAGTAAACCATCTAAACCACAAGTGGATACAGCTGTGGTTGATATTGGACCTCCTGCTGATTGGGTAAAAATCAATGTACAGAAAACTAAAGATTGTTTTGAGGTATATGCCTTAGTTCCAGGTCTTCTGCGGGAAGAGGTCCGTGTTCAATCAGACCCAGCAGGACGCTTAGTCATAAGTGGCGAGCCTGAGCATCCCAATAATCCTTGGGGTGTAACACCTTTCAAAAAGGTTGTGAGCTTGCCCTCAAGAATTGATCCTCATCAGACATCTGCAGTGGTGACGTTGCATGGGCAGTTGTTTGTTCGTGTCCCATTTGAACAGTCAGAATGA 1701 0.4362 MSDAKENEESGQGVPLAVEENQQLVDAQVEVQPEVASAPVTVEENSNHVENGKAEAVSEGIQQEVASAAEPPSEDKNEKHEAVSEGISQEVVNSTHHLVPVEADARVLNTTECEEASDAKVAAGEFPQSNTSVEKDDNVHQNSVETDDNVHQNSVGKDDNVHQNSVESVDNVRPNSVGDVETAVEVKPEVCEVTDSKTCDVGDPMPSSHNEPTTPQPAPADTKPEIKNVLEVENKANEKQAAEPADNGNSNSKHMCFLDADHCYDGNESGTDEEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIKGGELNVPIASHPEPMNIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSVSVQKREKQLKSINLLKRKKPSYMDNAVKAARSKPSKPQVDTAVVDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01424 566 CDD ARID 274 359 - -
Rops1g01424 566 SMART ARID_2 269 359 - -
Rops1g01424 566 Gene3D - 272 369 IPR036431 GO:0003677
Rops1g01424 566 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 84 565 IPR045147 GO:0006357
Rops1g01424 566 SMART bright_3 273 364 IPR001606 GO:0003677
Rops1g01424 566 Coils Coil 562 566 - -
Rops1g01424 566 MobiDBLite consensus disorder prediction 116 222 - -
Rops1g01424 566 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 466 566 IPR002068 -
Rops1g01424 566 Pfam ARID/BRIGHT DNA binding domain 275 359 IPR001606 GO:0003677
Rops1g01424 566 SUPERFAMILY HSP20-like chaperones 475 562 IPR008978 -
Rops1g01424 566 Gene3D - 459 566 IPR008978 -
Rops1g01424 566 MobiDBLite consensus disorder prediction 145 172 - -
Rops1g01424 566 CDD ACD_sHsps-like 481 561 - -
Rops1g01424 566 FunFam AT-rich interactive domain-containing protein 3 272 371 - -
Rops1g01424 566 ProSiteProfiles ARID domain profile. 272 363 IPR001606 GO:0003677
Rops1g01424 566 MobiDBLite consensus disorder prediction 71 85 - -
Rops1g01424 566 SUPERFAMILY ARID-like 267 375 IPR036431 GO:0003677
Rops1g01424 566 MobiDBLite consensus disorder prediction 1 23 - -
Rops1g01424 566 FunFam AT-rich interactive domain-containing protein 3 458 566 - -
Rops1g01424 566 MobiDBLite consensus disorder prediction 37 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01424 Rops-Chr1 31495315 31502735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01424 267 564 ARID Transcription Factor Family AT1G76510 65.017 1.02e-131 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Rops1g01424 HSP20 1.7e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01424 - - gmx:100791081 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01424 1 31495315 31502735 Rops1g01424 1 31495315 31502735 ECH