Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops1g01424 | ATGAGTGATGCAAAAGAAAACGAGGAATCTGGCCAGGGGGTGCCCTTGGCTGTGGAAGAAAACCAGCAATTGGTTGATGCACAGGTTGAAGTTCAACCTGAAGTTGCCTCTGCTCCTGTTACAGTAGAGGAAAATTCAAATCATGTTGAAAATGGGAAGGCAGAGGCTGTCTCAGAAGGCATTCAGCAAGAAGTTGCATCTGCCGCAGAGCCACCTTCTGAGGATAAAAATGAGAAACATGAGGCAGTTTCAGAAGGCATTTCACAAGAAGTTGTTAATAGTACTCATCACTTGGTCCCAGTAGAGGCTGATGCTCGGGTTTTGAATACAACCGAGTGTGAAGAAGCTTCTGATGCCAAGGTGGCAGCTGGAGAATTTCCTCAGAGTAATACAAGTGTTGAGAAGGATGATAATGTTCATCAAAATAGTGTTGAGACGGATGATAATGTTCATCAAAATAGTGTTGGGAAGGATGATAATGTTCATCAAAATAGTGTTGAGAGTGTTGATAATGTTCGTCCGAATAGTGTTGGTGATGTGGAAACAGCGGTGGAGGTGAAGCCTGAAGTTTGTGAGGTGACTGATAGTAAAACTTGTGATGTTGGTGACCCCATGCCCTCAAGTCATAATGAGCCTACAACACCGCAACCTGCCCCTGCTGACACAAAACCTGAAATCAAGAATGTATTAGAAGTTGAGAATAAGGCCAATGAAAAGCAAGCTGCTGAACCTGCAGATAATGGGAATTCAAACTCAAAGCACATGTGTTTCTTGGATGCTGATCATTGTTATGATGGTAATGAGTCAGGAACGGATGAGGAGCAATCAGCTTTTATGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGCATGGAATTCAAACCTCCCAAGTTTTATGGGGAAGGACTTAATTGTCTTAAGTTATGGAGAGCTGTAACAAGATTGGGTGGCTATGATAAGGTAACCTCATGTAAGTTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACTACAGTTTCATGGACTTTTCGGGGATTTTATGAGAAGGCCCTTCTTGATTATGAAAGGCATAAAATAAAAGGTGGCGAGCTGAATGTGCCTATTGCTTCCCATCCAGAGCCTATGAATATTGAAAATCAGGCTTCAGCATCAGGTAGAGCCCGGAGAGATGCTGCAGCACGAGCTATGCAGGGTTGGCACTCTCAACGTCTCCTTGGCAATGGTGAAGTTAGTGACCCAATTATTAAGGATAGGAATTCTGTGTCCGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATTTACTTAAACGTAAGAAACCGTCTTATATGGATAATGCAGTCAAAGCAGCACGCAGTAAACCATCTAAACCACAAGTGGATACAGCTGTGGTTGATATTGGACCTCCTGCTGATTGGGTAAAAATCAATGTACAGAAAACTAAAGATTGTTTTGAGGTATATGCCTTAGTTCCAGGTCTTCTGCGGGAAGAGGTCCGTGTTCAATCAGACCCAGCAGGACGCTTAGTCATAAGTGGCGAGCCTGAGCATCCCAATAATCCTTGGGGTGTAACACCTTTCAAAAAGGTTGTGAGCTTGCCCTCAAGAATTGATCCTCATCAGACATCTGCAGTGGTGACGTTGCATGGGCAGTTGTTTGTTCGTGTCCCATTTGAACAGTCAGAATGA | 1701 | 0.4362 | MSDAKENEESGQGVPLAVEENQQLVDAQVEVQPEVASAPVTVEENSNHVENGKAEAVSEGIQQEVASAAEPPSEDKNEKHEAVSEGISQEVVNSTHHLVPVEADARVLNTTECEEASDAKVAAGEFPQSNTSVEKDDNVHQNSVETDDNVHQNSVGKDDNVHQNSVESVDNVRPNSVGDVETAVEVKPEVCEVTDSKTCDVGDPMPSSHNEPTTPQPAPADTKPEIKNVLEVENKANEKQAAEPADNGNSNSKHMCFLDADHCYDGNESGTDEEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIKGGELNVPIASHPEPMNIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSVSVQKREKQLKSINLLKRKKPSYMDNAVKAARSKPSKPQVDTAVVDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE* | 567 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops1g01424 | 566 | CDD | ARID | 274 | 359 | - | - | |
Rops1g01424 | 566 | SMART | ARID_2 | 269 | 359 | - | - | |
Rops1g01424 | 566 | Gene3D | - | 272 | 369 | IPR036431 | GO:0003677 | |
Rops1g01424 | 566 | PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT | 84 | 565 | IPR045147 | GO:0006357 | |
Rops1g01424 | 566 | SMART | bright_3 | 273 | 364 | IPR001606 | GO:0003677 | |
Rops1g01424 | 566 | Coils | Coil | 562 | 566 | - | - | |
Rops1g01424 | 566 | MobiDBLite | consensus disorder prediction | 116 | 222 | - | - | |
Rops1g01424 | 566 | ProSiteProfiles | Small heat shock protein (sHSP) domain profile. | 466 | 566 | IPR002068 | - | |
Rops1g01424 | 566 | Pfam | ARID/BRIGHT DNA binding domain | 275 | 359 | IPR001606 | GO:0003677 | |
Rops1g01424 | 566 | SUPERFAMILY | HSP20-like chaperones | 475 | 562 | IPR008978 | - | |
Rops1g01424 | 566 | Gene3D | - | 459 | 566 | IPR008978 | - | |
Rops1g01424 | 566 | MobiDBLite | consensus disorder prediction | 145 | 172 | - | - | |
Rops1g01424 | 566 | CDD | ACD_sHsps-like | 481 | 561 | - | - | |
Rops1g01424 | 566 | FunFam | AT-rich interactive domain-containing protein 3 | 272 | 371 | - | - | |
Rops1g01424 | 566 | ProSiteProfiles | ARID domain profile. | 272 | 363 | IPR001606 | GO:0003677 | |
Rops1g01424 | 566 | MobiDBLite | consensus disorder prediction | 71 | 85 | - | - | |
Rops1g01424 | 566 | SUPERFAMILY | ARID-like | 267 | 375 | IPR036431 | GO:0003677 | |
Rops1g01424 | 566 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Rops1g01424 | 566 | FunFam | AT-rich interactive domain-containing protein 3 | 458 | 566 | - | - | |
Rops1g01424 | 566 | MobiDBLite | consensus disorder prediction | 37 | 86 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops1g01424 | Rops-Chr1 | 31495315 | 31502735 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops1g01424 | 267 | 564 | ARID Transcription Factor Family | AT1G76510 | 65.017 | 1.02e-131 | 389 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | ARID | Rops1g01424 | HSP20 | 1.7e-05 | CL0190 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops1g01424 | - | - | gmx:100791081 | 852.818 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops1g01424 | 1 | 31495315 | 31502735 | Rops1g01424 | 1 | 31495315 | 31502735 | ECH |