Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01415 ATGACCATTGATATGCCACCATCCGGGGCCCAAAGTGTGAGGACACACAGACCTTCCTTGAGCTCTAGCAATGGCATTGAGGGTACCCCTTTACACAGCTATGCTACTGTTAGCAATGGCGATGACTATGACAGTGATGGTAGCAATTTGGCACCACCCACACCAACAATGGCTATTCCAGCAGAACTCGCTGGAGTTGTACCCTTGATTGATAGATTCCAGGTGGAAGGATTTTTAAAATTGATGCAAAAACAAATTCAATCCGCTGGGAAACGTGGATTTTTTTCTAAAAGATCCGTGGGCCCTCAAGTTCGAGAGAAACTTACATTTGAAGACATGCTTTGTTTCCAAAAGGATCCAATACCAACATCGTTGCTTAAGCTGAATGGTGATTTGGCAAGCCGGGCACCAAAATTATTCCAGATAATTCTGAAATATATGGGAGTTGATTCATCTGATCATGTAACTCCAATAAGCTTAGAGGAACGAGTTGAGCTTGTAGGTAAACTATACAAACAAATTTTGAAGCGATCAGAACTCCGGGATGAACTTTTTGTCCAGATATCAAAACAAACTAGAAACAACCCTGAGAAGGAATACTTGATTAGAGCATGGGAGCTAATGTATTTATGTGCATCGTGCATGCCTCCTAGTAAAGACATTGGAGGGTATCTGTCAGAATATGTTCATAACGTGGCACATGGCGTGACTACTGACCCTGAGATCCGAGCCCTTGCATTAAATATGTTACATGCTTTGAAGCGCTCTGTCAAGGCTGGTCCTAGGCATATAATACCTGGGCCTATTGAGATTGAAGCTCTGTTGACTGGAAGAAAGCTTACAACTATAGTGTTCTTCCTGGATGAAACATTTGAAGAAATTACATATGACATGTCAACAACAGTTGCTGATGCTGTTGAGGAACTTGCAGGGATCATTAAACTGTCAACATACTCTAGCTTTAGCCTCTTTGAATGTCGTAAAGTTGTTACTGGCTCCAAATCACCTGATACTGGGAATGAGGAGTACATCGGGTTAGATGATAATAAACATATTGGGGATCTCCTGGCAGAATTTAAGGCAATGAAAGATAGAAGCAAGGGAGAAATTTTGCAGTGTAAACTGATATTCAAGAAGAAGTTATTTCGTGAATCAGATGAAGCTGTGACTGATCCAATGTTTTTGCAGTTGTCCTATGTACAATTGCAGCATGATTATATTTTGGGTAATTATCCTATTGGAAGGGATGATGCTTCCAAGCTTTCTGCATTGCAAATCTTGGCTGAGATTGGATTTGTTAGAAGACCTGAATCATGCGCTGAATGGAATTCATTTCTGGAGCGATTTCTGCCTAGACAAATTGCAATGACTCGAGCCAAAAGGGAATGGGAGTTGGACATTCTTTCTTGCTATCATTCCCTGGAGCATGTGGCAAAAGATGATGCACGACAACAATTTCTGCATATATTGAGAACACTTCCTTATGGGTTTTCTGTTTTTTTCATTCTTCGCAAAATTGATGATCCCATTGGACTCCTGCCTGGACGAATAATATTAGGAATTAACAAAAGAGGGGTTCATTTTTTTCGTCCGATTCCCAAGGAGTATTTGCACTCAGCTGAGTTGAGAGACATAATGCAATTTGGAAGCAGTAATACTGCAGTATTTTTCAAAATGCGAGTTGCAGGTGTTCTGCACATATTCCAGTTTGAAACCAAGCAGGGAGAAGAAATTTGTGTAGCTCTTCAGACACACATCAATGATGTAATGCTGCGCCGATATTCCAAAGCACGATCAACTGCTGCTGGTTCTTTGAATGAAGATATTTCCAATAATTTTAAGCCTCTGAATTTGGAGTCATATGAAAAACGTGTTCAAGATTTATCAAAAGTTGTTGAAGAATCTCAAAGGAATGCTGATCAATTGTCGGAAAAATTGCGTGAGAAGCAAAAACAAGAGGAGGAAATGCTACGAGAATTGGAGGGCTTGAAAGAATCTTCAAAAGTTGATAAGCATAGTCTCGAAGAAGTTACAAGTGAATGTGATAGGCTTAGGTCATTATGCAATGAAAAAGAAAAGGAACTTCAGGTTAAAATTTTTGAGAAAAGAAGCATGGAAACAAAGATGGCCAAGTTGAATAACTTGGTGATAGAAAGCACTACCAAAAAGGACCCCATTGGAGCAAATAACCAAGTGTTGCAAAAACTTGAAGATGACTTAAAACTTTGTAAAGATGAGCTTCTTGTAGCTGAAGAGACCATCAAAAGCTTGACAAATGAGAAGTCGATTTTGGCACAAAAGCTATCCGAGCTTGAGAAGAAGAATGTTGAAGAGATTAGTTCTCTTCAATGGAAACTTGAGCAAGAACGCAAAGCTCTGAACTCTCGAGTTTATGACCTTGAAAGAAAACTGGATGTGTTTAGACAAGAATTAGTTGTGGCTGAGTCCTCACTTTCAGTAAAGGACTCTGAATTGGCTGCATTGAAGGACAATTTAAGAGAACTAGAAGAATTGAGAGACATGAAAGAGGACATAGATAGAAAGAATGAACAAACAGCTGCCATATTGAAGATGCAAGGAGCTCAGCTAGCTGAATTGGAAATGCTTTATAAGGAAGAACAGGTTCTCAGGAAGCGATATTTTAATACCATTGAAGATATGAAAGGCAAAATAAGAGTTTACTGTCGGGTAAGACCTCTCGTTGAAAAAGAGATTGCTGACAAAGAAAGAGATGTTCTTACTACTGTAGATGAGTTTACGGTTGAGCATCCATGGAAAGATGATAAACCAAAACAGCACATGTATGATCGCGTATTTAATGGTGATGCCACTCAAGAAGATGTATTTGAGGATACAAGGTACTTGGTGCAATCTGCTGTTGATGGTTATAATGTTTGCATATTTGCTTATGGTCAAACCGGCTCTGGAAAAACATTTACAATCTATGGATCTGAAAACAATCCTGGGCTTACACCGCGTGCTACAGCAGAACTTTTTAGAATTTTAAGGAGAGATAGTAACAAGTTTTCTTTTTCCTTGAAGACATACATGTTGGAATTATATCAAGATACACTTGTAGATCTTCTGTTACCTAAGAATGCAAAGCGATTAAAATTGGAGATTAAGAAGGATTCAAAGGGAATGGTGACTGCAGAAAATGTAACAACTGTGTCAATCTCTACCATGGAGGAATTGAATAGCATAATACAAAGGGGGTCCGAACGACGACATACATCAGGGACACAAATGAATGAAGAAAGCTCAAGATCTCATCTCATACTATCCATTGTAATTGAAAGTACCAACCTTCAAAGTCAATCAGCTGCAAGGGGAAAGCTGAGTTTTGTTGATCTTGCTGGCTCAGAAAGAGTAAAAAAGTCAGGCTCTGAGGGCAGTCAACTCAAAGAAGCTCAAAGTATAAACAAATCATTATCAGCACTTGGAGATGTTATTAGTGCTTTATCTTCTGGTGGTCAACACATACCTTATAGAAATCACAAGTTAACTATGTTGATGAGTGATTCACTTGGGGGTAATGCCAAAACTCTCATGTTTGTCAATGTATCTCCAGCAGAATCAAACATGGATGAGACACATAACTCTCTTATGTATGCATCACGAGTGAGATCAATTGTGAATGATCCAAGCAAAAATGTTTCTTCAAAAGAGATAATTCGATTGAAGAAATTAGTTGCATATTGGAAGGAGCAAGCTGGTAGGAGAGGAGAAGATGAAGATTTAGAAGAAATTCAAGAAGTAAGGCCAACTAAAGAGAGGACTGATAACCGCCATTCTATGTAG 3801 0.3902 MTIDMPPSGAQSVRTHRPSLSSSNGIEGTPLHSYATVSNGDDYDSDGSNLAPPTPTMAIPAELAGVVPLIDRFQVEGFLKLMQKQIQSAGKRGFFSKRSVGPQVREKLTFEDMLCFQKDPIPTSLLKLNGDLASRAPKLFQIILKYMGVDSSDHVTPISLEERVELVGKLYKQILKRSELRDELFVQISKQTRNNPEKEYLIRAWELMYLCASCMPPSKDIGGYLSEYVHNVAHGVTTDPEIRALALNMLHALKRSVKAGPRHIIPGPIEIEALLTGRKLTTIVFFLDETFEEITYDMSTTVADAVEELAGIIKLSTYSSFSLFECRKVVTGSKSPDTGNEEYIGLDDNKHIGDLLAEFKAMKDRSKGEILQCKLIFKKKLFRESDEAVTDPMFLQLSYVQLQHDYILGNYPIGRDDASKLSALQILAEIGFVRRPESCAEWNSFLERFLPRQIAMTRAKREWELDILSCYHSLEHVAKDDARQQFLHILRTLPYGFSVFFILRKIDDPIGLLPGRIILGINKRGVHFFRPIPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICVALQTHINDVMLRRYSKARSTAAGSLNEDISNNFKPLNLESYEKRVQDLSKVVEESQRNADQLSEKLREKQKQEEEMLRELEGLKESSKVDKHSLEEVTSECDRLRSLCNEKEKELQVKIFEKRSMETKMAKLNNLVIESTTKKDPIGANNQVLQKLEDDLKLCKDELLVAEETIKSLTNEKSILAQKLSELEKKNVEEISSLQWKLEQERKALNSRVYDLERKLDVFRQELVVAESSLSVKDSELAALKDNLRELEELRDMKEDIDRKNEQTAAILKMQGAQLAELEMLYKEEQVLRKRYFNTIEDMKGKIRVYCRVRPLVEKEIADKERDVLTTVDEFTVEHPWKDDKPKQHMYDRVFNGDATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSENNPGLTPRATAELFRILRRDSNKFSFSLKTYMLELYQDTLVDLLLPKNAKRLKLEIKKDSKGMVTAENVTTVSISTMEELNSIIQRGSERRHTSGTQMNEESSRSHLILSIVIESTNLQSQSAARGKLSFVDLAGSERVKKSGSEGSQLKEAQSINKSLSALGDVISALSSGGQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNMDETHNSLMYASRVRSIVNDPSKNVSSKEIIRLKKLVAYWKEQAGRRGEDEDLEEIQEVRPTKERTDNRHSM* 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01415 1266 Gene3D MyTH4 domain 95 277 IPR038185 -
Rops1g01415 1266 ProSitePatterns Kinesin motor domain signature. 1111 1122 IPR019821 GO:0003777|GO:0005524|GO:0007018
Rops1g01415 1266 MobiDBLite consensus disorder prediction 1240 1266 - -
Rops1g01415 1266 CDD FERM_C_KCBP 498 603 - -
Rops1g01415 1266 MobiDBLite consensus disorder prediction 1 54 - -
Rops1g01415 1266 CDD FERM_B-lobe 395 493 IPR019748 -
Rops1g01415 1266 SMART kinesin_4 888 1219 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops1g01415 1266 Coils Coil 618 666 - -
Rops1g01415 1266 ProSiteProfiles FERM domain profile. 280 594 IPR000299 GO:0005856
Rops1g01415 1266 PRINTS Kinesin heavy chain signature 1081 1098 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops1g01415 1266 PRINTS Kinesin heavy chain signature 1112 1130 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops1g01415 1266 PRINTS Kinesin heavy chain signature 962 983 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops1g01415 1266 PRINTS Kinesin heavy chain signature 1161 1182 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops1g01415 1266 SUPERFAMILY Second domain of FERM 378 495 IPR035963 -
Rops1g01415 1266 Coils Coil 733 774 - -
Rops1g01415 1266 SMART MyTH4_1 116 275 IPR000857 GO:0005856
Rops1g01415 1266 Pfam FERM central domain 386 500 IPR019748 -
Rops1g01415 1266 FunFam Kinesin-like calmodulin binding protein 383 494 - -
Rops1g01415 1266 Coils Coil 818 855 - -
Rops1g01415 1266 Coils Coil 790 810 - -
Rops1g01415 1266 FunFam Kinesin-like calmodulin-binding protein 834 1213 - -
Rops1g01415 1266 PANTHER KINESIN-LIKE PROTEIN KLP-3 600 1257 IPR027640 GO:0003777|GO:0007018
Rops1g01415 1266 ProSiteProfiles Kinesin motor domain profile. 890 1211 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops1g01415 1266 MobiDBLite consensus disorder prediction 1 52 - -
Rops1g01415 1266 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 498 607 - -
Rops1g01415 1266 Gene3D - 498 605 IPR011993 -
Rops1g01415 1266 SUPERFAMILY PH domain-like 500 588 - -
Rops1g01415 1266 Gene3D - 383 494 IPR014352 -
Rops1g01415 1266 Gene3D Kinesin motor domain 877 1213 IPR036961 -
Rops1g01415 1266 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 279 382 - -
Rops1g01415 1266 Coils Coil 674 694 - -
Rops1g01415 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 890 1239 IPR027417 -
Rops1g01415 1266 Gene3D - 1214 1262 - -
Rops1g01415 1266 ProSiteProfiles MyTH4 domain profile. 116 275 IPR000857 GO:0005856
Rops1g01415 1266 SMART B41_5 276 500 IPR019749 -
Rops1g01415 1266 SUPERFAMILY Prismane protein-like 833 894 IPR011254 GO:0003824|GO:0016491
Rops1g01415 1266 Gene3D - 279 382 - -
Rops1g01415 1266 CDD KISc_C_terminal 888 1213 - -
Rops1g01415 1266 Pfam Kinesin motor domain 896 1211 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops1g01415 1266 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 95 277 - -
Rops1g01415 1266 Pfam MyTH4 domain 169 273 IPR000857 GO:0005856
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01415 Rops-Chr1 31325240 31334677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01415 34 1262 Calmodulin-binding Proteins AT5G65930 73.306 0.0 1830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01415 - - gmx:100782701 2152.87