Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01406 ATGGCTGCATCTTTAGTATCACTGGGTGGTAGTGACATATGGAAGGCCCATTTGGCCATGGCGCTTGTGCAGTTATTCAATGGTGGCTACCATGTCATCACCAAGGTTGCCCTTAATGTTGGGATCAACCAGTTAGTCTTCTGTGTCTTCAGGGATCTCCTTGCCCTTTCTCTCCTTGCACCCTTTGCTTATATCCGTGAAAAACAGATACGGCCACCCATTACTAAGAACCTCCTGATGTCATTCTTCTTTCTTGGATTAACTGGGATATTTGGCAATCAACTTTTGTTTCTTATTGGTTTGAGCTATACTAATCCAACTTATGCTGCTGCCATACAGCCATCCATTCCAGTCTTTACATTTCTGTTGGCTGTCATGATGGGTACAGAAAGAGTGAACTTACTCAGATATGATGGTTTGGTGAAGGTTGGAGGAACTCTGTTCTGTGTTTCTGGTGCCATATTGATGGTTTTGTATCGTGGTCCAATTTTGATAGGACATGCAGAAATGGCTCATGTCTCACTAAATGAAATAAGTGCCAGAGGTCATTCAGATCCTTCTGGATGGTTAATTGGTGGTTTCCAGGATCTTGGGTTAGACCATTTTCATCTTGGCGTTTTGTGCTTGATAGGGAACTGCATGTGCATGGCTGCTTTTCTAGCCATTCAGGCACCAGTATTAAAAAAATATCCTGCAAACCTATCGGTCACAGCATATTCATACTTCTTCGGAGCTGTACTGATGGTGACAGTGTCGTTATTCATGACTAGTGAGTCAACTGACTGGAGTTTGACACGATCAGAAATACTTGCTGTTACTTATGCTGGAACTATTGCATCTGCCCTTAACTATGGACTCATTACATGGTGCAACAAGATCTTGGGGCCAGCTTTGGTTGCCCTTTACAATCCACTTCAACCTGGGTTTTCAGCCCTCCTGTCCCAAATTTTCCTTGGAAGTCCAATTTACCTGGGAAGTATCATAGGGGGATCTTTGATCATTGCTGGTCTATATACTGTTACTTGGGCATCTTATAAAGAAAGACAGGCAACTGTTGGTGGGACTTCTCATGTTTCTTGGATCTCTGAACCACTTGTTCATGAAGAAAGTGCATTCCAAAGAGGTCACATTTTTTCTGAGTCCCCCAGTGTTTCCCCAAATGCAAAGCCATCAGATTAA 1179 0.43 MAASLVSLGGSDIWKAHLAMALVQLFNGGYHVITKVALNVGINQLVFCVFRDLLALSLLAPFAYIREKQIRPPITKNLLMSFFFLGLTGIFGNQLLFLIGLSYTNPTYAAAIQPSIPVFTFLLAVMMGTERVNLLRYDGLVKVGGTLFCVSGAILMVLYRGPILIGHAEMAHVSLNEISARGHSDPSGWLIGGFQDLGLDHFHLGVLCLIGNCMCMAAFLAIQAPVLKKYPANLSVTAYSYFFGAVLMVTVSLFMTSESTDWSLTRSEILAVTYAGTIASALNYGLITWCNKILGPALVALYNPLQPGFSALLSQIFLGSPIYLGSIIGGSLIIAGLYTVTWASYKERQATVGGTSHVSWISEPLVHEESAFQRGHIFSESPSVSPNAKPSD* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01406 392 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 158 - -
Rops1g01406 392 PANTHER WAT1-RELATED PROTEIN 18 348 IPR030184 GO:0016020|GO:0022857
Rops1g01406 392 Pfam EamA-like transporter family 16 141 IPR000620 GO:0016020
Rops1g01406 392 Pfam EamA-like transporter family 204 341 IPR000620 GO:0016020
Rops1g01406 392 SUPERFAMILY Multidrug resistance efflux transporter EmrE 241 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01406 Rops-Chr1 31256539 31261408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01406 99 370 Nodulin-like Gene Family AT5G45370 65.580 2.34e-127 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01406 - - gmx:100787738 636.336