Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01402 ATGCCACAGAACTGCATAGCACCAAAACCAGAATACTGCAATAGTCATTCTGTGGAAGGTCCACCAGAGATGACTGAGCCCCATAACTCAAGTGTCCTTGCCTACCCTATAAAAACCAATGAACGATCTTTACCAAAACTCATTATGTACCCCATAATTTTGAAGTTTGAGGAACTGGTGTACAAAGTTAAACTAGAGCAAAAAGGAGTATGTTGGGGCAGTACATGGACTTGCAAAGAGAAGACCATATTGAATGGGATCACAGGTGTGGTATGTCCAGGAGAAATACTTGCTATGTTGGGCCCATCAGGCAGTGGAAAAACCACACTTCTCACTGCTCTTGGAGGCCGTCTTAGTGGTAAACTATCTGGAAAGATCACATACAACAATCAACCTTTCTCAGGTGCCATAAAAAGAAGAACAGGTTTTGTGGCTCAGGATGATGTACTATACCCTCATCTCACTGTCACTGAAACTCTAGTGTTCACTGCACTTCTAAGGCTCCCAAACAGCTTGACAAGAGATGAAAAAGTTGAGCATGTAGAGAGAGTTATCACTGAGCTAGGACTGACTCGTTGCAGGAGCAGCATGATTGGAGGCCCACTTTTGAGAGGGATATCAGGTGGTGAGAAAAGGAGGGTGAGCATAGGCCAAGAAATGCTCATCAATCCAAGCCTCTTGTTGCTAGATGAGCCTACTTCAGGTTTGGATTCCACCACTGCTCTAAGGATCCTAAACACCATCAAACGCCTTGCTAGTGGTGGTAGAACTGTTGTTACCACCATTCATCAACCCTCTAGTCGCCTCTACTATATGTTTGATAAGGTAGTCTTGCTCTCTGAAGGGAGTCCCATCTATTATGGTCCAGCTTCAACTGCCCTTGATTACTTTTCATCTGTTGGTTTTTCTACATGTGTGACTGTCAATCCAGCTGATCTCTTGCTTGATCTTGCCAACGGGATTGGTCCTGACTCCAAGCATGTAACTGAACAAAGTGAGGGCCTGGAACAGGAGAGGAAGATGGTGAGAGAATCTCTCATATCTGCTTATGAAAAGAACATAGCTACAAGGCTGAAAGCTGAGGTTTGCAGCCTGGAGGTGAACAACTACAGTATCACAAAAGATGCTTGCACAAGAAATTCCATAAAACCAGAGCAATGGTGCACAAGCTGGTGGCATCAGTTCAAGGTATTATTACAGAGGGGAGTGAGGGAACGAAGGTATGAAGCCTTCAATAGGCTGAGAATATTCCAAGTCATAAGTGTTGCTTTTCTTGGTGGACTCTTGTGGTGGCATACACCAGAATCACACATTGAAGACCGGGTTGCCTTGCTTTTTTTCTTCTCAGTTTTCTGGGGATTCTACCCTCTCTACAATGCAGTTTTCACATTCCCTCAAGAGAGGAGAATGCTTATCAAGGAACGCTCATCAGGAATGTACCGTCTTTCTTCCTACTTTCTAGCTAGAACAATTGGAGACTTGCCATTGGAGCTTGCACTTCCAACAGCATTTGTCTTCATAATCTATTGGATGGGAGGACTTAAACCTGATCCAGCGACTTTCATCCTTTCTCTTCTTGTGGTTCTTTACAGTGTTGTTGTCTCTCAAAGTCTTGGCCTAGCATTTGGTGCCATTTTGATGGAAGTTAAACAGGCTACTACTCTAGCTTCTGTGACAACCCTTGTGTTTCTCATTGCTGGAGGTTACTACATACAACAGATTCCACCATTCATAGTGTGGCTCAAGTACTTGAGCTATAGCTACTATTGTTACAAGCTTCTTCTTGGTGTCCAATACAATGAAGGTGATTATTATGAGTGCTCAAAAGGGGAACTATGCAAGGTTATGGATTTTCCTCCTATCAAATCAATGGGCTTGAATCATATGTGGGTTGATGTGTTCATTATGGCCTTGATGTTGGTGGGTTATAGACTAATTGCTTATTTAGCACTGCGGAGAGTTAGGTAG 1968 0.4339 MPQNCIAPKPEYCNSHSVEGPPEMTEPHNSSVLAYPIKTNERSLPKLIMYPIILKFEELVYKVKLEQKGVCWGSTWTCKEKTILNGITGVVCPGEILAMLGPSGSGKTTLLTALGGRLSGKLSGKITYNNQPFSGAIKRRTGFVAQDDVLYPHLTVTETLVFTALLRLPNSLTRDEKVEHVERVITELGLTRCRSSMIGGPLLRGISGGEKRRVSIGQEMLINPSLLLLDEPTSGLDSTTALRILNTIKRLASGGRTVVTTIHQPSSRLYYMFDKVVLLSEGSPIYYGPASTALDYFSSVGFSTCVTVNPADLLLDLANGIGPDSKHVTEQSEGLEQERKMVRESLISAYEKNIATRLKAEVCSLEVNNYSITKDACTRNSIKPEQWCTSWWHQFKVLLQRGVRERRYEAFNRLRIFQVISVAFLGGLLWWHTPESHIEDRVALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTIGDLPLELALPTAFVFIIYWMGGLKPDPATFILSLLVVLYSVVVSQSLGLAFGAILMEVKQATTLASVTTLVFLIAGGYYIQQIPPFIVWLKYLSYSYYCYKLLLGVQYNEGDYYECSKGELCKVMDFPPIKSMGLNHMWVDVFIMALMLVGYRLIAYLALRRVR* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01402 655 SMART AAA_5 93 283 IPR003593 GO:0016887
Rops1g01402 655 ProSitePatterns ABC transporters family signature. 206 220 IPR017871 GO:0005524|GO:0016887
Rops1g01402 655 Pfam ABC-2 type transporter 394 599 IPR013525 GO:0016020|GO:0140359
Rops1g01402 655 CDD ABCG_EPDR 51 288 - -
Rops1g01402 655 FunFam ABC transporter G family member 22 71 300 - -
Rops1g01402 655 Pfam ABC-2 type transporter 263 360 IPR043926 GO:0140359
Rops1g01402 655 Pfam ABC transporter 85 234 IPR003439 GO:0005524
Rops1g01402 655 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 54 306 IPR003439 GO:0005524
Rops1g01402 655 Gene3D - 71 300 IPR027417 -
Rops1g01402 655 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 30 648 - -
Rops1g01402 655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 298 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01402 Rops-Chr1 31219977 31223104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01402 83 283 Calmodulin-binding Proteins AT2G36910 30.476 2.97e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01402 K05681 - gmx:100780191 1214.91