Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01397 ATGGCGGATCGGTTGACACGTATTGCAATCGTGAGCAACGACAGGTGCAAGCCCAAGAAGTGCCGCCAAGAGTGTAAGAAGAGTTGCCCTGTTGTCAGAACCGGTAGATTGTGTATTGAGGTTACCCACGCATCCAAGATTGCTTACATATCTGAGGAATTGTGTATTGGATGCGGTATTTGTGTTAAGAAATGTCCTTTTGAAGCCATCCAGATTATCAACTTGCCAAAGGATTTGGACAAAGACACCACTCATAGATATGGTCCTAATACTTTTAAGCTACATAGGTTGCCGGTGCCGAGGCCAGGGCAAGTGCTTGGGTTGGTTGGGACAAATGGAATTGGAAAGTCCACTGCATTAAAAGTTTTGGCTGGAAAATTGAAACCGAACCTGGGTCGTTTCACTAACCCGCCTGATTGGCAGGAAATTTTAACCTATTTTCGAGGATCTGAATTGCAGAATTACTTTACTCGTATTCTAGAGGATGATTTGAAGGCGATCATCAAGCCTCAGTATGTTGACCACATTCCAAAAGCTGTGCAAGGGAATGTGGGGCAGGTGCTAGACCAGAAAAATGAGAGAGATATGAAGGAAGAGCTTTGTGCTGATCTCGATCTTAACCAGGTTAGCGATCGTAATGTTGGTGATCTTTCAGGCGGTGAGCTCCAAAGGTTTGCCATTGCGGTTGTTGCCATCCAGAATGCTGAGATATACATGTTTGATGAACCTTCTAGTTATCTCGATGTTAAACAAAGGCTGAAAGCTGCCCAAGTTGTTCGATCATTGCTCAGGCCTAATAGCTATGTAATTGTTGTAGAGCATGATCTTAGTGTCTTGGACTACTTATCAGACTTCATTTGCTGTTTGTATGGCAAACCTGGTGCATATGGAGTGGTAACACTTCCTTTCTCAGTCAGAGAAGGAATTAACATCTTCTTGGCTGGCTTTGTTCCAACAGAAAATCTTAGGTTCCGGGATGACTCTCTTACCTTCAAGGTTGCTGAGACTCCACAGGAAAGTGCTGAAGAAGCTCAGGCATATGCTCGATACAAATACCCAACCATGACCAAAACTCAAGGCAATTTCAAGCTTAAAGTAGTTGAAGGAGAATTTACTGATTCTCAGATTATTGTGATGCTGGGGGAAAATGGGACAGGAAAAACAACATTTATTCGCATGCTGGCTGGTTTATTGAAACCTGACACCATTGAAGGTGGATCTGATGCGGAGTTGCCTGAATTTAATGTTTCATACAAGCCTCAGAAGATTAGCCCAAAGTTCCAATCAACTGTTAGACACTTGCTACATCAAAAAATTCGTGATGCGTATACTCATCCCCAGTTTATATCGGATGTGATGAAGCCACTTCTTATCGAACAGTTGATGGACCAAGAGGTTGTGAATCTTTCTGGTGGAGAGTTGCAAAGAGTTGCCTTGTGTCTTTGTCTTGGAAAGCCTGCAGACATCTATCTGATAGATGAGCCAAGTGCATATCTAGATTCTGAACAGCGTATTCATGCTGCCAAAGTCATTAAGAGGTTTATTCTTCATGCAAAGAAAACGGCTTTTGTGGTTGAGCACGATTTCATCATGGCAACTTATCTTGCCGACAGAGTTATTGTTTATGAGGGTCAATCTTCAATCGATTGTACTGCAAATGCTCCTCAATCATTGTTGACTGGGATGAACCTATTCTTATCACATCTTGATATCACATTTAGAAGAGACCCGACTAATTTTCGCCCAAGGATCAACAAACTTGATTCAACCAAGGACAGAGAACAAAAGTCTGCTGGGTCTTATTATTACCTTGATGACTGA 1821 0.4239 MADRLTRIAIVSNDRCKPKKCRQECKKSCPVVRTGRLCIEVTHASKIAYISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFTNPPDWQEILTYFRGSELQNYFTRILEDDLKAIIKPQYVDHIPKAVQGNVGQVLDQKNERDMKEELCADLDLNQVSDRNVGDLSGGELQRFAIAVVAIQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDDSLTFKVAETPQESAEEAQAYARYKYPTMTKTQGNFKLKVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDTIEGGSDAELPEFNVSYKPQKISPKFQSTVRHLLHQKIRDAYTHPQFISDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIHAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQSSIDCTANAPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDREQKSAGSYYYLDD* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01397 606 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 348 569 IPR003439 GO:0005524
Rops1g01397 606 FunFam ATP-binding cassette sub-family E member 1 334 604 - -
Rops1g01397 606 PRINTS ABC transporter family E signature 79 99 IPR013283 -
Rops1g01397 606 PRINTS ABC transporter family E signature 52 76 IPR013283 -
Rops1g01397 606 PRINTS ABC transporter family E signature 140 156 IPR013283 -
Rops1g01397 606 PRINTS ABC transporter family E signature 24 39 IPR013283 -
Rops1g01397 606 PRINTS ABC transporter family E signature 107 132 IPR013283 -
Rops1g01397 606 PRINTS ABC transporter family E signature 156 182 IPR013283 -
Rops1g01397 606 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 70 315 IPR003439 GO:0005524
Rops1g01397 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 291 IPR027417 -
Rops1g01397 606 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 46 75 IPR017896 -
Rops1g01397 606 ProSitePatterns ABC transporters family signature. 469 483 IPR017871 GO:0005524|GO:0016887
Rops1g01397 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 543 IPR027417 -
Rops1g01397 606 SMART AAA_5 102 294 IPR003593 GO:0016887
Rops1g01397 606 SMART AAA_5 373 546 IPR003593 GO:0016887
Rops1g01397 606 Gene3D - 1 332 IPR027417 -
Rops1g01397 606 CDD ABC_RNaseL_inhibitor_domain2 350 599 - -
Rops1g01397 606 Pfam ABC transporter 102 244 IPR003439 GO:0005524
Rops1g01397 606 Pfam 4Fe-4S binding domain 49 71 IPR017896 -
Rops1g01397 606 FunFam ATP-binding cassette, sub-family E, member 1 1 332 - -
Rops1g01397 606 Pfam Possible Fer4-like domain in RNase L inhibitor, RLI 6 37 IPR007209 -
Rops1g01397 606 CDD ABC_RNaseL_inhibitor_domain1 78 332 IPR034348 -
Rops1g01397 606 ProSitePatterns ABC transporters family signature. 217 231 IPR017871 GO:0005524|GO:0016887
Rops1g01397 606 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 55 66 IPR017900 -
Rops1g01397 606 SUPERFAMILY 4Fe-4S ferredoxins 6 145 - -
Rops1g01397 606 Gene3D - 337 604 IPR027417 -
Rops1g01397 606 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 606 IPR013283 -
Rops1g01397 606 Pfam ABC transporter 365 497 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01397 Rops-Chr1 31160051 31165189 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01397 350 527 Calmodulin-binding Proteins AT2G36910 23.980 8.50e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01397 K06174 - gmx:100797423 1175.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01397 1 31160051 31165189 Rops1g01397 1 31160051 31165189 ECH