Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01385 ATGGCTCCCTATACTAGTGGTGTAGTTGTAAGGCATAGTGAACCGCAACTGGTGGTGCCGGCAGAACCGACTCCAGGTGAAGTGAAACAGCTATCAGACATAGATGACCAAGAAGGGCTTCGTAAGCAGTTCTCTTTCATAATGTTTCACAAAAGCAACCCAACTAAGAAAGAAGCTGACCCTGCAAAAATCATAAAAAGAGCCATATCTCAGGCACTTGTGCCTTACTATCCATTGGCTGGGAGGTTCATTGAAGGGCCTAACAGAAAACTTATGGTAGATTGCAGTGCTGAGGGGATTTTGTTCATTGAAGCTGAGGCTGATATTTCCTTGGAACAGATAGGTGACTCAATTAGACCACCATGTCCATATAGGAAAGACTTTCTACACCAAGTGCCTGGATCTGAAGCCATTCTTGGCTGCCCTCTCTTGTTAATTCAGGTAACTCGTCTCTCATATGGAGGATTCGTATTTGCTGTCCGCATGAACCATGTTATGTGTGACTCTTTTGGACTGGTTCAGTTCCTCAACATGGTGGGAACATTAGCAAGAGACCCATACTCATCAGTTCAGCCACCTGTGTGGAGAAGAGAACTATTTAGTGCACGACATCCTCCACGCATCACTTGCATACACCATGAGTACGAAGATGTCATGGAGCACATAACTTTACATTCAATGGACAGTAATGACAGCATGGTCCATGGGTCTTTCTTCTTTGGTTCCAAAGAGATTCTCTCACTTCGGAAGCGTCTTCCCCATAACCTTCAGAAATGCTCAACTTTTGAGTTACTATCAGCATGTCTGTGGAAATGCCGTACCGTGGCACTTGATGTGGGCCCCAATGAGGTGGTTGGCGTGTCTTGCTTTATCACTGCTCGTGGTAAGGTAAAAGTGCCTGATGAGTACTACGGCAATGCATTTGTCTTTCCAACTGCACTATCAGAGGCTGCTCTGTTGTGCCAAAAACCATTGGGGTATGCTTTGGATTTGATAAGAGACGCAAAAGCTCGAATGAATGAAGAATACATAAGGTCAGCGGCTGATCTTTTGGTGCTTAAGGGGCGTCCTATGTATAGAACAGCTGGGAACTTTCTTGTGGCTGATGCGACTCATGTGGGTTTTGAGCAAGTTGATTTTGGTTGGGGGAACCCAATATATGGAGGCCCAGCTGAAGCCATACCATTTGTTAGCTTCCTTGCTCGGTTCAGAAATAACAGAGGCAGGGATGGAATTGTGGCCATGATGTTGTTGCCACAGCTTGTGATGAAAAAATTTCTTTTGGAGCTGATGAAAATGACAACTGATGATGAGGAGACTCTGAACTATCATCCAAATTACAGAATGGAAAGAGCTAGATCCATGTTGTAA 1371 0.4471 MAPYTSGVVVRHSEPQLVVPAEPTPGEVKQLSDIDDQEGLRKQFSFIMFHKSNPTKKEADPAKIIKRAISQALVPYYPLAGRFIEGPNRKLMVDCSAEGILFIEAEADISLEQIGDSIRPPCPYRKDFLHQVPGSEAILGCPLLLIQVTRLSYGGFVFAVRMNHVMCDSFGLVQFLNMVGTLARDPYSSVQPPVWRRELFSARHPPRITCIHHEYEDVMEHITLHSMDSNDSMVHGSFFFGSKEILSLRKRLPHNLQKCSTFELLSACLWKCRTVALDVGPNEVVGVSCFITARGKVKVPDEYYGNAFVFPTALSEAALLCQKPLGYALDLIRDAKARMNEEYIRSAADLLVLKGRPMYRTAGNFLVADATHVGFEQVDFGWGNPIYGGPAEAIPFVSFLARFRNNRGRDGIVAMMLLPQLVMKKFLLELMKMTTDDEETLNYHPNYRMERARSML* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01385 456 Gene3D - 216 428 IPR023213 -
Rops1g01385 456 PANTHER ACYL TRANSFERASE 4 8 434 - -
Rops1g01385 456 Gene3D - 6 215 IPR023213 -
Rops1g01385 456 Pfam Transferase family 13 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01385 Rops-Chr1 30824927 30828616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01385 47 430 Monolignol Biosynthesis Gene Families AT5G48930 28.180 6.66e-41 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01385 K19861 - qsu:112039270 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01385 1 30824927 30828616 Rops1g01385 1 30824927 30828616 ECH