Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01381 ATGCTGACCATCTTTGAGGTCTTGTTCCAAGCAAGGCACCAGAAAGCTTCATCAGCCACACGCACAAAGCACAAGCTCCACCTGCATTACCGAGCTTCATTCTGTTTCAACTCATACCAGGGATGGTGGGTTTATCTTGAGGAGAACAACAACAACGACAACACTACCAATGGAGGAAGCACCGTTGGTGTTTGTTTTCGAGGTGCACCAACCATATTCGGACGTGGACCAAGGAAGAGTGATAACACCAAATATTATGATATCCTTGGTATTACAAGGAATGCTAGTGAAGATCAAATCAAGAAAGCCTATAGAAAGGCAGCGATGAAGAACCATCCAAATAAGGGTGGAGATCCTGAGAAGTTCAAGGAGTTGGGTCAAGCATATGAAGTTTTAAGTGATCCTGAAAAGGATAGAGAAGCTGCCCGAGCTGCATATTTGGCAAGACTTCCCAATGCATTTTGGCTTGCAACCATGTACGAAGAACCCATGTTGCATGAAGTTGATGGTTCAACTCCTACAGGGAGCACTATGTTTTACAAAGGCTCATGGTGGAAAGATATTGGCTGTGGGGTCCCTCCACAAGAAGTCGCGAATTCCCCAGCATGCAAGGCTTGCTACCATCAAGTTGTTCGTATAATATTGTTGTCACAGGTCAGCAGTGACGTGGGAAGCACTGCTTGGGCACTATAG 693 0.456 MLTIFEVLFQARHQKASSATRTKHKLHLHYRASFCFNSYQGWWVYLEENNNNDNTTNGGSTVGVCFRGAPTIFGRGPRKSDNTKYYDILGITRNASEDQIKKAYRKAAMKNHPNKGGDPEKFKELGQAYEVLSDPEKDREAARAAYLARLPNAFWLATMYEEPMLHEVDGSTPTGSTMFYKGSWWKDIGCGVPPQEVANSPACKACYHQVVRIILLSQVSSDVGSTAWAL* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01381 230 PRINTS DnaJ domain signature 117 137 IPR001623 -
Rops1g01381 230 PRINTS DnaJ domain signature 86 104 IPR001623 -
Rops1g01381 230 SMART dnaj_3 83 137 IPR001623 -
Rops1g01381 230 SUPERFAMILY Chaperone J-domain 80 142 IPR036869 -
Rops1g01381 230 Pfam DnaJ domain 84 138 IPR001623 -
Rops1g01381 230 Gene3D DnaJ domain 77 157 IPR036869 -
Rops1g01381 230 PANTHER CO-CHAPERONE PROTEIN DJLA 40 188 - -
Rops1g01381 230 CDD DnaJ 85 134 IPR001623 -
Rops1g01381 230 ProSiteProfiles dnaJ domain profile. 84 150 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01381 Rops-Chr1 30707421 30708292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01381 85 135 C2H2 Transcription Factor Family AT1G74250 43.333 3.04e-08 51.6