Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01374 ATGAAGAGCATCAACGACGATGGTTCCACTCAAGATCTCCTCGATCCTCAAAGCGACCACAGTTCCGATTATTTAACGCACTCTCACTCAAACCCTCAGTCTCAGTCTCGCCGTCCTCGTGGTTTCGCGGCGGCGGCTGCGGCAGCGACGGGGAACAATTCCGCCGGAAAGGGGAAGAAGGAGAGAGAAAAGGAGAAGGAGCGTACGAAGCTCCGTGAACGACACCGTCGTGCCATCACGAGTCGCATGCTCGCCGGACTCCGTCAGTATGGGAATTTCCCTCTGCCGGCGCGTGCCGACATGAACGACGTACTCGCCGCACTCGCGCGTGAGGCTGGTTGGGTTGTCGACGCCGATGGCACCACCTATCGCCAGTGTCCCCCTGCTTCTCACATGGGATCATTTGCGGCAAGGTCAGTTGAAAGTCAACTTTCTGCTGGTTCATTGAGAACTGGCTCTGTTAAGGAACCATTAGAGAATCAGCCACCAGTGCTTAGAATTGATGAATGCTTGTCACCTGCGTCCATTGATTCTGTTGTAATTGCAGAGAGGGACTCAAAGAATGGGAAATATGCAAGTGCAAGCCCCATCAATTCAGTTGACTGCTTGGAGGCTGATCAGCTTATGCAAGATATTCATTCCGGGGTGCATGAAAATGACTTTACTGGAACACCATGTGTTCCCATTTACACAAAGCTTCCAGCTGGTATTATTAACAAATTTTGCCAGTTGATTGATCCTGAAGGCATTAGGCAGGAGCTAATCCATATTAAGTCTTTAAATATAGATGGTGTTGTTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAGCCCGCAGAAATATGTGTGGTCTGGCTATAGGGAGCTTTTTAACATTATTAGAGAATTCAAGCTCAATTTACAGGTTGTTATGGCATTTCATGAATGTGGAGGGAATGATTCTAGTGATGCATTGATTTCTCTCCCACAATGGGTTTTGGATATTGGAAAAGAAAACCAGGATATATTCTTCACAGATCGTGAAGGGCGGAGGAATACTGAATGCCTATCTTGGGGAATTGACAAAGAACGAGTTCTCAAAGGCAGAACTGGAATTGAGGTCTATTTTGATATGATGAGAAGCTTTAGGACAGAGTTTGACAACCTGTTTGCAGAAGGTCTGATTTCTGCTGTAGAAATTGGACTTGGAGCATCTGGAGAGCTGAAATACCCTTCTTTTTCAGAAAGAATGGGATGGAGGTATCCTGGTATCGGTGAGTTTCAGTGCTATGATAAATACCTGCAACATAGTCTACGCAGAGCAGCTAAATTACGTGGTCACTCTTTCTGGGCTAGAGGACCTGATAATGCTGGACACTACAACTCTATGCCTCATGAAACTGGATTCTTTTGTGAGCGAGGTGATTATGACAACTACTATGGACGATTCTTCTTACACTGGTACTCCCAGACATTAGTAGACCATGCAGATAATGTTTTATCTCTTGCAACCCTTGCTTTTGAGGAAACAAAAATAATTGTCAAGGTTCCTGCTGTATACTGGTGGTATAAGACTCCTAGTCATGCAGCAGAGTTGACAGCAGGATATCACAACCCCACAAATCAGGATGGATATGCTCCCGTGTTTGAGGTTCTGAGAAAACATGCTGTCACCATGAAATTTGTCTGCTTAGGATTTCATCTTTCCAGCCAGGAAGCTAATGAATCATTGGTTGATCCAGAGGGTTTGAGTTGGCAGGTAATAAACTCAGCCTGGGATCGGGGGTTGATTGCTGCTGGAGAGAATGCTCTTCTTTGCTATGATAGAGAAGGGTACAAGAGATTGGTTGAAATGGCAAAGCCCAGAAATGATCCTGATCACCGCCACTTCTCTTTCTTTGTTTATCAGCAGCCATCTTTACTTCAGGGAAATGTTTGCTTGTCAGAATTGGATTTCTTCATCAAATGCATGCATGGTGAGATGACAGGAGATCTATAA 1980 0.4551 MKSINDDGSTQDLLDPQSDHSSDYLTHSHSNPQSQSRRPRGFAAAAAAATGNNSAGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQCPPASHMGSFAARSVESQLSAGSLRTGSVKEPLENQPPVLRIDECLSPASIDSVVIAERDSKNGKYASASPINSVDCLEADQLMQDIHSGVHENDFTGTPCVPIYTKLPAGIINKFCQLIDPEGIRQELIHIKSLNIDGVVVDCWWGIVEGWSPQKYVWSGYRELFNIIREFKLNLQVVMAFHECGGNDSSDALISLPQWVLDIGKENQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFDNLFAEGLISAVEIGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQHSLRRAAKLRGHSFWARGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLVDHADNVLSLATLAFEETKIIVKVPAVYWWYKTPSHAAELTAGYHNPTNQDGYAPVFEVLRKHAVTMKFVCLGFHLSSQEANESLVDPEGLSWQVINSAWDRGLIAAGENALLCYDREGYKRLVEMAKPRNDPDHRHFSFFVYQQPSLLQGNVCLSELDFFIKCMHGEMTGDL* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01374 659 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 261 275 IPR001554 GO:0000272|GO:0016161
Rops1g01374 659 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 397 419 IPR001554 GO:0000272|GO:0016161
Rops1g01374 659 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 470 489 IPR001554 GO:0000272|GO:0016161
Rops1g01374 659 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 521 532 IPR001554 GO:0000272|GO:0016161
Rops1g01374 659 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 504 520 IPR001554 GO:0000272|GO:0016161
Rops1g01374 659 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 539 562 IPR001554 GO:0000272|GO:0016161
Rops1g01374 659 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 577 599 IPR001554 GO:0000272|GO:0016161
Rops1g01374 659 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 304 325 IPR001554 GO:0000272|GO:0016161
Rops1g01374 659 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 282 300 IPR001554 GO:0000272|GO:0016161
Rops1g01374 659 MobiDBLite consensus disorder prediction 1 38 - -
Rops1g01374 659 MobiDBLite consensus disorder prediction 56 73 - -
Rops1g01374 659 Pfam BES1/BZR1 plant transcription factor, N-terminal 56 203 IPR008540 -
Rops1g01374 659 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 166 654 IPR001554 GO:0000272|GO:0016161
Rops1g01374 659 MobiDBLite consensus disorder prediction 1 73 - -
Rops1g01374 659 Pfam Glycosyl hydrolase family 14 246 626 IPR001554 GO:0000272|GO:0016161
Rops1g01374 659 Gene3D Glycosidases 217 658 - -
Rops1g01374 659 SUPERFAMILY (Trans)glycosidases 221 655 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01374 Rops-Chr1 30495982 30503580 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01374 8 655 Glycoside Hydrolase AT5G45300 66.667 0.0 878
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Rops1g01374 Glyco_hydro_14 5.5e-86 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01374 K01177 - gmx:100777004 1217.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01374 1 30495982 30503580 Rops1g01374 1 30495982 30503580 ECH