Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops1g01374 | ATGAAGAGCATCAACGACGATGGTTCCACTCAAGATCTCCTCGATCCTCAAAGCGACCACAGTTCCGATTATTTAACGCACTCTCACTCAAACCCTCAGTCTCAGTCTCGCCGTCCTCGTGGTTTCGCGGCGGCGGCTGCGGCAGCGACGGGGAACAATTCCGCCGGAAAGGGGAAGAAGGAGAGAGAAAAGGAGAAGGAGCGTACGAAGCTCCGTGAACGACACCGTCGTGCCATCACGAGTCGCATGCTCGCCGGACTCCGTCAGTATGGGAATTTCCCTCTGCCGGCGCGTGCCGACATGAACGACGTACTCGCCGCACTCGCGCGTGAGGCTGGTTGGGTTGTCGACGCCGATGGCACCACCTATCGCCAGTGTCCCCCTGCTTCTCACATGGGATCATTTGCGGCAAGGTCAGTTGAAAGTCAACTTTCTGCTGGTTCATTGAGAACTGGCTCTGTTAAGGAACCATTAGAGAATCAGCCACCAGTGCTTAGAATTGATGAATGCTTGTCACCTGCGTCCATTGATTCTGTTGTAATTGCAGAGAGGGACTCAAAGAATGGGAAATATGCAAGTGCAAGCCCCATCAATTCAGTTGACTGCTTGGAGGCTGATCAGCTTATGCAAGATATTCATTCCGGGGTGCATGAAAATGACTTTACTGGAACACCATGTGTTCCCATTTACACAAAGCTTCCAGCTGGTATTATTAACAAATTTTGCCAGTTGATTGATCCTGAAGGCATTAGGCAGGAGCTAATCCATATTAAGTCTTTAAATATAGATGGTGTTGTTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAGCCCGCAGAAATATGTGTGGTCTGGCTATAGGGAGCTTTTTAACATTATTAGAGAATTCAAGCTCAATTTACAGGTTGTTATGGCATTTCATGAATGTGGAGGGAATGATTCTAGTGATGCATTGATTTCTCTCCCACAATGGGTTTTGGATATTGGAAAAGAAAACCAGGATATATTCTTCACAGATCGTGAAGGGCGGAGGAATACTGAATGCCTATCTTGGGGAATTGACAAAGAACGAGTTCTCAAAGGCAGAACTGGAATTGAGGTCTATTTTGATATGATGAGAAGCTTTAGGACAGAGTTTGACAACCTGTTTGCAGAAGGTCTGATTTCTGCTGTAGAAATTGGACTTGGAGCATCTGGAGAGCTGAAATACCCTTCTTTTTCAGAAAGAATGGGATGGAGGTATCCTGGTATCGGTGAGTTTCAGTGCTATGATAAATACCTGCAACATAGTCTACGCAGAGCAGCTAAATTACGTGGTCACTCTTTCTGGGCTAGAGGACCTGATAATGCTGGACACTACAACTCTATGCCTCATGAAACTGGATTCTTTTGTGAGCGAGGTGATTATGACAACTACTATGGACGATTCTTCTTACACTGGTACTCCCAGACATTAGTAGACCATGCAGATAATGTTTTATCTCTTGCAACCCTTGCTTTTGAGGAAACAAAAATAATTGTCAAGGTTCCTGCTGTATACTGGTGGTATAAGACTCCTAGTCATGCAGCAGAGTTGACAGCAGGATATCACAACCCCACAAATCAGGATGGATATGCTCCCGTGTTTGAGGTTCTGAGAAAACATGCTGTCACCATGAAATTTGTCTGCTTAGGATTTCATCTTTCCAGCCAGGAAGCTAATGAATCATTGGTTGATCCAGAGGGTTTGAGTTGGCAGGTAATAAACTCAGCCTGGGATCGGGGGTTGATTGCTGCTGGAGAGAATGCTCTTCTTTGCTATGATAGAGAAGGGTACAAGAGATTGGTTGAAATGGCAAAGCCCAGAAATGATCCTGATCACCGCCACTTCTCTTTCTTTGTTTATCAGCAGCCATCTTTACTTCAGGGAAATGTTTGCTTGTCAGAATTGGATTTCTTCATCAAATGCATGCATGGTGAGATGACAGGAGATCTATAA | 1980 | 0.4551 | MKSINDDGSTQDLLDPQSDHSSDYLTHSHSNPQSQSRRPRGFAAAAAAATGNNSAGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQCPPASHMGSFAARSVESQLSAGSLRTGSVKEPLENQPPVLRIDECLSPASIDSVVIAERDSKNGKYASASPINSVDCLEADQLMQDIHSGVHENDFTGTPCVPIYTKLPAGIINKFCQLIDPEGIRQELIHIKSLNIDGVVVDCWWGIVEGWSPQKYVWSGYRELFNIIREFKLNLQVVMAFHECGGNDSSDALISLPQWVLDIGKENQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFDNLFAEGLISAVEIGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQHSLRRAAKLRGHSFWARGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLVDHADNVLSLATLAFEETKIIVKVPAVYWWYKTPSHAAELTAGYHNPTNQDGYAPVFEVLRKHAVTMKFVCLGFHLSSQEANESLVDPEGLSWQVINSAWDRGLIAAGENALLCYDREGYKRLVEMAKPRNDPDHRHFSFFVYQQPSLLQGNVCLSELDFFIKCMHGEMTGDL* | 660 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops1g01374 | 659 | PRINTS | Beta-amylase (glycosyl hydrolase family 14) signature | 261 | 275 | IPR001554 | GO:0000272|GO:0016161 | |
Rops1g01374 | 659 | PRINTS | Beta-amylase (glycosyl hydrolase family 14) signature | 397 | 419 | IPR001554 | GO:0000272|GO:0016161 | |
Rops1g01374 | 659 | PRINTS | Beta-amylase (glycosyl hydrolase family 14) signature | 470 | 489 | IPR001554 | GO:0000272|GO:0016161 | |
Rops1g01374 | 659 | PRINTS | Beta-amylase (glycosyl hydrolase family 14) signature | 521 | 532 | IPR001554 | GO:0000272|GO:0016161 | |
Rops1g01374 | 659 | PRINTS | Beta-amylase (glycosyl hydrolase family 14) signature | 504 | 520 | IPR001554 | GO:0000272|GO:0016161 | |
Rops1g01374 | 659 | PRINTS | Beta-amylase (glycosyl hydrolase family 14) signature | 539 | 562 | IPR001554 | GO:0000272|GO:0016161 | |
Rops1g01374 | 659 | PRINTS | Beta-amylase (glycosyl hydrolase family 14) signature | 577 | 599 | IPR001554 | GO:0000272|GO:0016161 | |
Rops1g01374 | 659 | PRINTS | Beta-amylase (glycosyl hydrolase family 14) signature | 304 | 325 | IPR001554 | GO:0000272|GO:0016161 | |
Rops1g01374 | 659 | PRINTS | Beta-amylase (glycosyl hydrolase family 14) signature | 282 | 300 | IPR001554 | GO:0000272|GO:0016161 | |
Rops1g01374 | 659 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Rops1g01374 | 659 | MobiDBLite | consensus disorder prediction | 56 | 73 | - | - | |
Rops1g01374 | 659 | Pfam | BES1/BZR1 plant transcription factor, N-terminal | 56 | 203 | IPR008540 | - | |
Rops1g01374 | 659 | PANTHER | BETA-AMYLASE 1, CHLOROPLASTIC | 166 | 654 | IPR001554 | GO:0000272|GO:0016161 | |
Rops1g01374 | 659 | MobiDBLite | consensus disorder prediction | 1 | 73 | - | - | |
Rops1g01374 | 659 | Pfam | Glycosyl hydrolase family 14 | 246 | 626 | IPR001554 | GO:0000272|GO:0016161 | |
Rops1g01374 | 659 | Gene3D | Glycosidases | 217 | 658 | - | - | |
Rops1g01374 | 659 | SUPERFAMILY | (Trans)glycosidases | 221 | 655 | IPR017853 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops1g01374 | Rops-Chr1 | 30495982 | 30503580 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops1g01374 | 8 | 655 | Glycoside Hydrolase | AT5G45300 | 66.667 | 0.0 | 878 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | BES1 | Rops1g01374 | Glyco_hydro_14 | 5.5e-86 | CL0058 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops1g01374 | K01177 | - | gmx:100777004 | 1217.6 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops1g01374 | 1 | 30495982 | 30503580 | Rops1g01374 | 1 | 30495982 | 30503580 | ECH |