Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01373 ATGCGTTTGAGCTATAGCAAGGTCGCATATGCTAATCCCAATTGCTGTGCTTATGGGACAAACTTAGTGGATGGTATATGGAGTTCCATTGGCCCGGCATCTCGTGTTACTGCAGCTGCTGATTACTCAGTTTGGCAATTACCAATGAGGGCGGAAAAATCTTTAGAAAGCTCCAATCGATCTGGAGAGCAGTTTGCCATCTCTGCAGATCTGAAACACCTGGGATCTCAAAAAGATCCCATTTTGATTTCTGGGTCTTGCTCTTTGGCCTATTGGGTGATTGAAAAAGCATTCATTTTTGGGAGTTTTTCATCTGGCATTGTTATCACTAAGATGGGGTCTAGTGGCAGCAAAGCCACTTCTTCTTGCAGTTCATCATCTTCTTCAGGAAGTTTCAGGAAGGGTCGATCTAAAAGGCATATAGGTTTCCCTTCTTATTGTTTAGGAACAACATCTGGATCTCGTGACAGTGACAATGATGACCAGGTTTGTGATCAGAATAAAGTAAATGGAAGTGATGTCACATACGCCAGCGGCAATGAAATAGACTCAGATGAAGTGAAAAAAGAGTCCTTTAGGAAGGATAAATCTGATGAATCACGGTGTGTGCCTTCTAACATTGACCTTGATGAGTGGGGTCACACTGCATCCAGAACCGGCAGCAGCTCTGCTGATGCTTCTTCAACTCAGTCCTTGAACCCTTCAAGTCGATTCCTTTCTCGTTTTAGCCTCATTCCTGGTAATATAAGCTTCAGACTTAGCAGAACCACCAGTTTGGGGTCATCAAGGCCCTGTCCTGTTTCTTCGGCAAATCTCTCAATATTTAACAATGAAGATGAGCTTAATCTGCATCCAAGGCCTCCTGCCAGCCCGATTAATAGAAATGAAACTCAACAATGTAGTGACTTGCTTAATGCAACCTTTGTGAATCGTGTACCTGTACAGTATCATGAAGATGCTTCTAATAATTTAAGTTCTAATACCCCGGTGTTGCGTTCGGCTGGAAACTTGCAGAGCAGTCCCACACTTTCTCCGATCCAGAATGCCATTAGAGATGGAGATGCTACAAGAGAAGTGCCACATATGAACTTATTTTCTCCAAGAACTCATACTGAGACAGATAATGCTGGGACTAGACACACGGATAGACGAAATGGAGCTCGGGAACCTGTTGAACGTAATGTTCGTTTTAGCCGAACTTTAAGTGTTGGAAGGCTTCGTGACAGAGTTCTCCGCCGATCATCATTATCTGACTTTACCTTTTGCCCTCTGCAACAAGAGAGAGAAGTGAGAGATGGTAGTCAGGATAGTGGAAGACAAGTAGGGGAGAGAGATTCAAGAGTGTCACCATTTGGTCGTAATAATGTAAATTCTCGTACTACATCTGGATATCCTCTACCCAACATGTCTAACTCCATGTTTAGCACTGAAGACTATGAGGTTGAGACTTCACGATCAAGAGAAACTAGGTATCAGGATCTACTGGAACATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATACGATCCCAGGTTCGTGCTCTTCAGAGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTGTCTGGTCATCATAGAAATGGTCGTTGTACATGCAGAATAAGTAATCGTGATAACAATTCAAATGATGACACCAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCATCAGCAATCTGTGGTTTTATCTTCCCGCCCTTCTGTGTCTTCTATTGGATCTGTTCCTGCACCTACTGAAGTTGTGGAATCCTTGCCTGTCAAATTATACACAAAGTTGCACAAACATCAAGAAGAACCTGTACAATGCTATATATGCCTTGTGGAGTATGAAGATGGAGACAGCATGCGAGTACTGCCTTGCCATCATGAATTTCACACAACATGTATAGACAAGTGGCTGAAGGAGATTCATAGGGTATGCCCATTATGTCGGGGAGACATTTGTATATCTGATTCACTACCAACGGAGAACTAA 2052 0.4274 MRLSYSKVAYANPNCCAYGTNLVDGIWSSIGPASRVTAAADYSVWQLPMRAEKSLESSNRSGEQFAISADLKHLGSQKDPILISGSCSLAYWVIEKAFIFGSFSSGIVITKMGSSGSKATSSCSSSSSSGSFRKGRSKRHIGFPSYCLGTTSGSRDSDNDDQVCDQNKVNGSDVTYASGNEIDSDEVKKESFRKDKSDESRCVPSNIDLDEWGHTASRTGSSSADASSTQSLNPSSRFLSRFSLIPGNISFRLSRTTSLGSSRPCPVSSANLSIFNNEDELNLHPRPPASPINRNETQQCSDLLNATFVNRVPVQYHEDASNNLSSNTPVLRSAGNLQSSPTLSPIQNAIRDGDATREVPHMNLFSPRTHTETDNAGTRHTDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSSLSDFTFCPLQQEREVRDGSQDSGRQVGERDSRVSPFGRNNVNSRTTSGYPLPNMSNSMFSTEDYEVETSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGHHRNGRCTCRISNRDNNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPTEVVESLPVKLYTKLHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCIDKWLKEIHRVCPLCRGDICISDSLPTEN* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01373 683 SUPERFAMILY RING/U-box 606 676 - -
Rops1g01373 683 FunFam Putative RING zinc finger domain superfamily protein 597 675 - -
Rops1g01373 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 591 674 IPR013083 -
Rops1g01373 683 MobiDBLite consensus disorder prediction 164 179 - -
Rops1g01373 683 ProSiteProfiles Zinc finger RING-type profile. 628 670 IPR001841 -
Rops1g01373 683 MobiDBLite consensus disorder prediction 366 391 - -
Rops1g01373 683 MobiDBLite consensus disorder prediction 152 234 - -
Rops1g01373 683 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 112 682 - -
Rops1g01373 683 SMART ring_2 628 669 IPR001841 -
Rops1g01373 683 MobiDBLite consensus disorder prediction 429 443 - -
Rops1g01373 683 MobiDBLite consensus disorder prediction 450 471 - -
Rops1g01373 683 Pfam Ring finger domain 627 670 IPR001841 -
Rops1g01373 683 MobiDBLite consensus disorder prediction 114 137 - -
Rops1g01373 683 MobiDBLite consensus disorder prediction 215 234 - -
Rops1g01373 683 MobiDBLite consensus disorder prediction 114 132 - -
Rops1g01373 683 MobiDBLite consensus disorder prediction 373 391 - -
Rops1g01373 683 MobiDBLite consensus disorder prediction 427 471 - -
Rops1g01373 683 MobiDBLite consensus disorder prediction 182 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01373 Rops-Chr1 30486372 30494314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01373 156 677 C3H Transcription Factor Family AT5G45290 47.681 6.24e-119 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01373 - - gmx:100815830 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01373 1 30486372 30494314 Rops1g01373 1 30486372 30494314 ECH