Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01372 ATGAAGAGCATGAAAATAGGCCAATGGCTAAACCTTCTATTGTGTGCACTGCTATTGCTGAAGGCAGAAGCTTCTTATGTACCAATCACTTTTCTCCATAAAGCTGTGACAAAAGGAGCCGTTTGTTTGGATGGGAGTCCTCCAGCTTACCATTTTCATAAGGGATTTGGATCAGGGATTAACAGTTGGTTAGTTGATTTTGAGGGAGGGGGATGGTGCAACAATGTCACTACTTGCCTTGCCCGCAAGAACACTCGTTTAGGTTCATCTAAGCAAATGGCCAAGCAAATTGCTTTTTCAGGAATTTTAAATAACGGGCAACAGTTTAATCCAGATTTCTACAACTGGAACAGAATCAAGGTTAGATATTGTGATGGGGCATCATTTACTGGTGATGTGGAAGCAGTCAATCCAGTAACTAAGTTGCACTTCAGAGGAGCAAGGATTTTTAATGCTGTCATGGAGGATTTACTAGCCAAAGGAATGAAAAATGCTCGAAATGCTATTATCACTGGATGTTCAGCTGGAGGATTGACTTCAATACTGCATTGTGATCGTTTTAGAGCTCTATTACCTAGAGGAGCTAAAGTGAAATGCCTCTCAGATGCTGGTTACTTCATCAATGCAAGGGATGTCTCTGGAGCACAACACATTGCACTGTACTTCAGTCAAATTGCTGCCACACATGGCTCTGCAAGGAATTTGCCTCAATCATGCACTTCAAGACTCAGCCCAGGGCTGTGCTTTTTCCCAGAATATTTTGTATCTCAAATCGCTACACCAATCTTCTTTGTAAATGCAGCATACGACTCATGGCAGATTAAGAACATTTTGGCACCTGGTGTTGCTGATCCTCAAGGCCACTGGCATGGCTGCAAGCTAGATATAAACAACTGCTCACCTGATCAACTTGATCTAATGCAAGGCTTCAGGACAGAATTCTTAAGAGCATTGACTGTGCTGAGAAACTCTCCATCTAAAGGAATGTTTATAGACTCTTGCTATGCTCATTGCCAAACTGAAATGCAGGAGACATGGTTGAGAAGTGACTCTCCCCTGCTCAACAAAACAACAATTGCGAAGGCTGTAGCAGACTGGTTTTATGAAAGAAGGCCCTTCCATCAGATAGATTGCCCTTACCCTTGCAATCCAAGTTGTCACAACCGCGTTTTTGAACCAGAAAACCAACCAGGAAAAAATGTGACCACCAAAGGACCTTCAGGTGCATCATCATCAGCTGGAAAGCCAAGTTTTCCAAAACTATCAAACAAGGCACAATGGATTGAGCTTTTGTGCATTAAACACGGGATCAGTGGGTTTCTACTATCCTTGGTCATTCTGGTTATCCTATAA 1353 0.425 MKSMKIGQWLNLLLCALLLLKAEASYVPITFLHKAVTKGAVCLDGSPPAYHFHKGFGSGINSWLVDFEGGGWCNNVTTCLARKNTRLGSSKQMAKQIAFSGILNNGQQFNPDFYNWNRIKVRYCDGASFTGDVEAVNPVTKLHFRGARIFNAVMEDLLAKGMKNARNAIITGCSAGGLTSILHCDRFRALLPRGAKVKCLSDAGYFINARDVSGAQHIALYFSQIAATHGSARNLPQSCTSRLSPGLCFFPEYFVSQIATPIFFVNAAYDSWQIKNILAPGVADPQGHWHGCKLDINNCSPDQLDLMQGFRTEFLRALTVLRNSPSKGMFIDSCYAHCQTEMQETWLRSDSPLLNKTTIAKAVADWFYERRPFHQIDCPYPCNPSCHNRVFEPENQPGKNVTTKGPSGASSSAGKPSFPKLSNKAQWIELLCIKHGISGFLLSLVILVIL* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01372 450 Pfam Pectinacetylesterase 21 371 IPR004963 GO:0016787
Rops1g01372 450 PANTHER NOTUM-RELATED 9 388 IPR004963 GO:0016787
Rops1g01372 450 MobiDBLite consensus disorder prediction 393 417 - -
Rops1g01372 450 Coils Coil 450 450 - -
Rops1g01372 450 MobiDBLite consensus disorder prediction 395 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01372 Rops-Chr1 30478972 30487277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01372 5 397 Carbohydrate Esterase AT4G19420 60.981 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01372 K19882 - gmx:100776478 777.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01372 1 30478972 30487277 Rops1g01372 1 30478972 30487277 ECH