Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01370 ATGTCAAACATTCCCAAGGAAGTTGTGGCCCCAGAGTATGGGAAATTTGAAGTCAAGTTCATTAGGAAAAGTGTTGTAAAAGCTGTCAATCCTTTACCAGAGCCATTTTCAATTACTCTCTCAAATCTTGACCTCCTTTCAGGCCGTTTTCCTGTTACTTACTTGTATTTCTACCGAAGACCAAAACTAGGTAACTTCAAAGCTATTGTTGAGACCCTTAAGAGCACTCTATCACAAATACTCAACTACTACTATCCCTTTGCTGGTCAAATTGTTCAAAATCCCAAAACTAATGAACCTGAAATCATTTGTGACAACAATGGTGCTCTAGTCATTGAAGCTCATGTTAATATCCCATTAAAGAATTTAGATTTTTATAATCTCAATGAAACTCTTCAAGAGAAGATAGTCTCAGTTCAACCAGACTACCCCATGCAAATTCAGGTAACAGAATACACTTGTGGTGGCATTTCAGTAGCCTTTACTTTTGATCATGCATTAGGTGATGCAAGTTCCTTTGGTAAATTTATTGCCTCATGGTGTGAAATAGCTCAAAACAAGCCACTTTCATGCATACCTGACCATACTAGACACCTTTGTGCACGTTCACCTCCCAAATATCAACCATCATTGGACCAAACTTTTATCAAATGCACCATGGAAGAGATACAGAACATGCAAATGAACCGCATATCACTTAAACGCCTTTATCATATCAATGCATCAAGTATTAACATGCTGCAGAGACTTGCTTCTGTTAATGGCACCAAGAGAACAAAGATTGAGGCTTTCTCTGCTTATGTCTGGAAGATAATGATTGGCACAATTGATCAAAGCCATAGAAAGTGCAAGATGGGTTGGTTGGTGGATGGAAGAGAAAGAATGGGAAAAGGTAAGAATTCTATGTCAAATTACATTGGTAATGTCTTGTCTGTGGCTTTTGGGGAGGCAAGTATTCAAGAATTAAAGGAAGCCTCAATATCAGATACTGCTAACATAGTGCATGAAGCAATTTCAAAGGTTAGCAATGAGGCTCATTTCTTGGATTTGATTGATTGGATTGAGTGCCATAGGCCTGGTTTGATGTTAGCAAAAGCAGTATTGGGTCAAGAGGGACCAGCCCTTGTGGTGTCTTCAGGACAAAGGTTTCCTGTGACTGAAGTTGACTTTGGATTTGGGACTCCTTTGTTAGGGACAGTGTACACTTCCATTGAAGGGGTTGGAGTTGGTTACATGAACCAAAGGCCTAGTGCTAAGGGTGATGGTTCATGGACTGTGTCAGCCATCTTGTGGCCTGAACTGGAAACTGCACTGAAGGATGACCCAATTTTTCAGCCTATGTCTGCTTCTCACCTTCAATTTTAG 1365 0.4 MSNIPKEVVAPEYGKFEVKFIRKSVVKAVNPLPEPFSITLSNLDLLSGRFPVTYLYFYRRPKLGNFKAIVETLKSTLSQILNYYYPFAGQIVQNPKTNEPEIICDNNGALVIEAHVNIPLKNLDFYNLNETLQEKIVSVQPDYPMQIQVTEYTCGGISVAFTFDHALGDASSFGKFIASWCEIAQNKPLSCIPDHTRHLCARSPPKYQPSLDQTFIKCTMEEIQNMQMNRISLKRLYHINASSINMLQRLASVNGTKRTKIEAFSAYVWKIMIGTIDQSHRKCKMGWLVDGRERMGKGKNSMSNYIGNVLSVAFGEASIQELKEASISDTANIVHEAISKVSNEAHFLDLIDWIECHRPGLMLAKAVLGQEGPALVVSSGQRFPVTEVDFGFGTPLLGTVYTSIEGVGVGYMNQRPSAKGDGSWTVSAILWPELETALKDDPIFQPMSASHLQF* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01370 454 Gene3D - 13 214 IPR023213 -
Rops1g01370 454 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 29 403 - -
Rops1g01370 454 Gene3D - 217 440 IPR023213 -
Rops1g01370 454 Pfam Transferase family 17 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01370 Rops-Chr1 30444071 30445529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01370 41 433 Monolignol Biosynthesis Gene Families AT5G48930 25.598 3.66e-23 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01370 - - gmx:100795616 772.696