Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01368 ATGAAGCAGCCATCAAAACCATGGAGACCCTTCACATCAAACTGCTGCACAACTGAGGACCAAACCATCTTTAGAAACTTCAGCAGGTGCAAGCCTTCACGTTCAGATTACTCCAAGAACGTTGCTCCTTTACCATCATTTAGGAGACTCTCTTTCTCTGATCTTAGCCGCTCCTCATCCATACGAATCAATGAAGATCTTGCACAGTCTTTTGGTGCTGATTTGTATGATTTTCAGCTGACTGAGCTGAAAGCCATCACACAGAATTTTTCTAGCAATTTCTTGCTTGGTGAAGGTGGGTTTGGAACAGTGCATAAGGGTTATTTAGATGATAACTTGAGGCAAGGTTTGAAGGCACAACCTGTTGCTGTCAAGCTTCTAGACATTGAAGGTTTACAAGGACACCGTGAATGGCTTGCAGAAGTGATTTTTCTTGGGCAGCTAAGACACCCCAATTTGGTTAAGTTGATTGGTTATTGTTGTGAGGATGAAGAACGGCTACTTGTCTATGAATTCATGCCACGTGGAAGCTTGGAGAATCACTTGTTCAGGAGACTAACATCACTGCCATGGGCAACAAGACTAAGAATAGCAATAGGTGCAGCTAAGGGTCTTTCCTTCTTGCATGGAGCTGAGAAGCCAGTCATTTATAGAGACTTCAAGACTTCCAATGTCTTGCTTGATTCAGACTTCACAGCAAAACTGTCAGATTTTGGTCTTGCAAAAATGGGGCCAGAGGGATCAAAGTCACATGTTACAACCAGAGTTATGGGCACCTATGGATATGCAGCCCCGGAATACATCTCAACAGGGCACTTGACAACAAAAAGTGATGTCTATAGCTTTGGTGTAGTCCTGCTAGAAATGCTAACAGGAAGGAGAGCAATGGACAAGACAAGACCAAAGACTGAACAAAACCTTGTAGATTGGTCAAAACCTTACTTGAGTAGCAGTAGGAGGTTACGTTACATTATGGATCCAAGGCTTGCAGGCCAATATTCTGTGAAAGGTGCAAAAGAAGTGGCCCATTTGGCACTGCAATGCATAAGTTTGAATCCTAAAGACAGACCAAGAATGCCAACCATTGTTGAAACTCTTGAAAGCCTTGAGCAGTTTAAGGACATGGCAGTTACCAGTGGACACTGGCCAGCATCATCAAAATCTACTAGAAATGGACCCTCCAATAATAAGGTGAAAACTAGAGCTGTTGCAAACCACAAGCAACCCTCTCCTCCAGTTCGGAGCAGAAAAACTTGA 1257 0.4336 MKQPSKPWRPFTSNCCTTEDQTIFRNFSRCKPSRSDYSKNVAPLPSFRRLSFSDLSRSSSIRINEDLAQSFGADLYDFQLTELKAITQNFSSNFLLGEGGFGTVHKGYLDDNLRQGLKAQPVAVKLLDIEGLQGHREWLAEVIFLGQLRHPNLVKLIGYCCEDEERLLVYEFMPRGSLENHLFRRLTSLPWATRLRIAIGAAKGLSFLHGAEKPVIYRDFKTSNVLLDSDFTAKLSDFGLAKMGPEGSKSHVTTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLEMLTGRRAMDKTRPKTEQNLVDWSKPYLSSSRRLRYIMDPRLAGQYSVKGAKEVAHLALQCISLNPKDRPRMPTIVETLESLEQFKDMAVTSGHWPASSKSTRNGPSNNKVKTRAVANHKQPSPPVRSRKT* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01368 418 Gene3D Transferase(Phosphotransferase) domain 1 173 382 - -
Rops1g01368 418 Gene3D Phosphorylase Kinase; domain 1 53 172 - -
Rops1g01368 418 FunFam Serine/threonine-protein kinase BIK1 57 172 - -
Rops1g01368 418 PANTHER OS01G0588500 PROTEIN-RELATED 61 370 - -
Rops1g01368 418 MobiDBLite consensus disorder prediction 377 418 - -
Rops1g01368 418 ProSiteProfiles Protein kinase domain profile. 90 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01368 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Rops1g01368 418 ProSitePatterns Protein kinases ATP-binding region signature. 96 125 IPR017441 GO:0005524
Rops1g01368 418 FunFam Serine/threonine-protein kinase PBS1 173 381 - -
Rops1g01368 418 Pfam Protein tyrosine and serine/threonine kinase 96 366 IPR001245 GO:0004672|GO:0006468
Rops1g01368 418 CDD STKc_IRAK 96 369 - -
Rops1g01368 418 SUPERFAMILY Protein kinase-like (PK-like) 75 367 IPR011009 -
Rops1g01368 418 MobiDBLite consensus disorder prediction 381 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01368 Rops-Chr1 30426236 30429165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01368 78 404 Glycoside Hydrolase AT3G07070 49.405 8.90e-104 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops1g01368 PK_Tyr_Ser-Thr 8.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01368 - - lang:109333209 756.133