Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01362 ATGTTCAGTGGTAGAGGTGACGATGCCCTAGCGGGTCGCCTCGGCATGGTGACGCCGTCCCTGCTGAATCCGGCAACTTCATCGGTGATATCCGGCGAGATATCGCCGGCGCCGACGACTCAGCCTCAGTGGAGCCCACAGGAGACGAGAGAGTTCATAGCGATTCGCGCGGAGTTCGAGAGGGACTTCACTGCGTCGAAGAGGAACAAGACGCTATGGGAAGTTGTGAGCTCGAAGATGAGAGAGAGAGGGTTCAGAAGAAGCCCCGAACAATGCAAATGCAAGTGGAAGAACCTCGTTAATCGCTATAAGGGAAAAGAGACATCTGATCCAGAGCAAGGCAGGAAATGCCCATTTTTTGAAGAATTGCATGCTGTCTTTACCCAAAGAGCACACAACATGCAACGGTTGCTTCTTGAATCTGAAACTCGTTCAGCTCAAACAAAGAAAGGGGTGAAAAGATCAAGTGGAGATCGATCCTCAGAGGAATTATCAGAAGATGATGATGAGGTTGAAGATGACAGTGAAGAGGAGAGACCTGCTAGAAGCAATACCCGCAAAAGGAAAGCTGACAAAATTGCAACGGAGAAGTCTTCAAGGGCAAACAATGCATCTAATAGTACTGGTAGTATTCAGGAAATGCTCAAGGAATTTTTCCAGCACCAGCTAAAAATGGAGATGCAGTGGAGGGAGATGATGGAAAGGCGGGCTCATGAAAGACAGCTGTTTGAGCAGGAATGGCGGCAATCAATGGAAAAGCTTGAGAGGGAGAGATTAATGATTGAACAGGCATGGAGGGAGAGAGAAGAACAGCGAAGAATAAGAGACGAGAGTAGGGCAGAGAGAAGGGATGCTTTGTTGACGACCCTTTTGAACAAACTCATACATGAATCTAATTAA 900 0.4778 MFSGRGDDALAGRLGMVTPSLLNPATSSVISGEISPAPTTQPQWSPQETREFIAIRAEFERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRYKGKETSDPEQGRKCPFFEELHAVFTQRAHNMQRLLLESETRSAQTKKGVKRSSGDRSSEELSEDDDEVEDDSEEERPARSNTRKRKADKIATEKSSRANNASNSTGSIQEMLKEFFQHQLKMEMQWREMMERRAHERQLFEQEWRQSMEKLERERLMIEQAWREREEQRRIRDESRAERRDALLTTLLNKLIHESN* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01362 299 MobiDBLite consensus disorder prediction 139 209 - -
Rops1g01362 299 CDD GT1 42 107 - -
Rops1g01362 299 FunFam Zinc finger and SCAN domain-containing 20 44 105 - -
Rops1g01362 299 MobiDBLite consensus disorder prediction 162 176 - -
Rops1g01362 299 MobiDBLite consensus disorder prediction 146 161 - -
Rops1g01362 299 Coils Coil 244 264 - -
Rops1g01362 299 Gene3D - 44 105 - -
Rops1g01362 299 PANTHER FI21293P1 39 296 - -
Rops1g01362 299 MobiDBLite consensus disorder prediction 177 196 - -
Rops1g01362 299 ProSiteProfiles Myb-like domain profile. 44 100 IPR001005 -
Rops1g01362 299 SMART sant 40 102 IPR001005 -
Rops1g01362 299 Pfam Myb/SANT-like DNA-binding domain 42 125 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01362 Rops-Chr1 30356371 30358393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01362 42 294 Trihelix Transcription Factor Family AT2G38250 45.914 2.32e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Rops1g01362 Myb_DNA-bind_4 2.3e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01362 - - gmx:100812635 463.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01362 1 30356371 30358393 Rops1g01362 1 30356371 30358393 ECH