Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01359 ATGGAGAGCAACGAGGTAGAAGAGGAGCTTCTCAACATCGAGGTCGAGATTCAAGATGTACAAGAGCAAATAAGGGCCTTAATTGAACGGCAAGAGATGTTGTATGAGAGAAAATCTGAGCTGAGTGCTATTTTGGAAGCATGTAAAGAATCTGGAAACCAGGTGAATAATGTGGCTCCAAGCACTGTGGAAAATTGGAGTGGGCCATTTGAATGGGATTCTGAAGCAGATGATCTTAGGTTGAATATTTTTGGCATTTCATCTTATCGTGCAAATCAAAGAGAGATAATTAATGCCATCATGAGTGGAAGAGATGTTCTGGTGATTATGGCTGCAGGTGGTGGCAAAAGCCTCTGCTACCAGCTTCCTGCTGTTCTTCGTAATGGAATTGCACTAGTTGTCAGTCCTTTGCTTTCCTTAATTCAAGACCAGGTAATGGGTTTGACTGCTTTGGGCATCCCAGCATATATGTTAACTTCAACAACAAGTAAGGAAGATGAGAAGTTTATATACAAGGCTTTGGAGAAGGGTGAGGGGGAACTCAAAATATTGTATGTGACTCCAGAAAAGATATCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAATGCCATCATGCTGGTCGTCTCTCTCTAATTTCAATTGATGAGGCACATTGCTGTAGTCAGTGGGGTCATGACTTTCGACCTGACTACAAGAACCTTGGTATACTCAAGACTCAGTTCCCTAATGTTCCTATGGTTGCTTTGACTGCAACTGCTACTCAAAGGGTCCAAAATGATCTGATAGAGATGTTGCATATTCCAAGATGTGTCAAATTTGTCAGCACAGTCAATAGGCCAAACTTGTTTTATATGGTAAAGGAAAAGTCATCTGTTGGTAAGGTAGTTATTGATGAAATTGCTGAATTCATTCAAGAATCTTATCCAAATAAGGAATCAGGGATTGTATATTGCTTCTCTAGGAAGGAATGTGAACAGGTTGCAAAGGAGTTAAGGGAGAGAGGAGTTTCAGCTGATTATTATCATGCAGACATGGATGTTAACGCTCGGGAAAAAGTACATATGCGGTGGAGCAATAACAGGCTGCAGGTCATAGTTGGTACAGTAGCTTTTGGCATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCACAGCTTGAGTAAATCAATGGAGACATACTACCAGGAAAGTGGTCGAGCTGGCCGAGACGGACTTCCTTCGGAATGCCTATTATACTTTAGACCTGGTGATGTTCCCCGGCAGAGTTCAATGGTCTTCTACGAAAATTCAGGACTGCAGAATCTCTATGACATAGTACGATATTGTCAGTCTAAAAGACAATGCCGACGAAGTGCCTTTTTCCGGCATTTTGCTGAGCCGCTACAAGAGTGCAATGGGATGTGTGACAACTGTGCATCCTCAAGTGAGGTGAAGGAAGTGGATGTCTCTCGTCATGCGAAACTGATGGTCTCTTTGTTGCAAGATATGCAAGCAAATGACCAGAGATCAACAATGTTGCAATTAGTCGAGAAAATGAAAACAAAACAGAAGGAACTAGGTTCTGAATTAAAACGAGAGGAAATTGAGCAGCTCATCTTGCACCTTTTACTGGAGCGTGTTTTGAAACAAGAATTTCAGCATACAGCTTATGCCACAAATGCTTACATTGCTGTAGGACCGTTGGCCAAGCAAATATTGCAAGGGAAGAAGACTGTGAAGCTTGAGATTTATAGTGAACAGAGAAGTAAAGCTGGTGTAAGATCAGTGAAACGCGGCCTCGGATCCTCTGGTTTGGAGCTAAAGCTCGATGAGCTGAGAAAAGAACTGGCTTCCATTCATGGAGGAATACTCCCACACTCTGTCTTGTCCACTCAACAAATCAGCTTATTAAGTTCTCAAAAACCAAACTCCCTGGAACAGTTAGAGAAGGTAATTGGAAAATTGAAGACAGAAAAGTATGGAAATAGAATACTTGAGCAAATTGAAAAGTATTCTGATTTCAAGCCAACTGATGAACAAGTTACTGATGGTAGAGCCGCAAAGAGGTCAAAGACCAAGAAGAACCTTGTTCTTATTGAGAGTAGTGAAGATGAAGCATGA 2109 0.4144 MESNEVEEELLNIEVEIQDVQEQIRALIERQEMLYERKSELSAILEACKESGNQVNNVAPSTVENWSGPFEWDSEADDLRLNIFGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRNGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTTSKEDEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMVALTATATQRVQNDLIEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKVVIDEIAEFIQESYPNKESGIVYCFSRKECEQVAKELRERGVSADYYHADMDVNAREKVHMRWSNNRLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRSAFFRHFAEPLQECNGMCDNCASSSEVKEVDVSRHAKLMVSLLQDMQANDQRSTMLQLVEKMKTKQKELGSELKREEIEQLILHLLLERVLKQEFQHTAYATNAYIAVGPLAKQILQGKKTVKLEIYSEQRSKAGVRSVKRGLGSSGLELKLDELRKELASIHGGILPHSVLSTQQISLLSSQKPNSLEQLEKVIGKLKTEKYGNRILEQIEKYSDFKPTDEQVTDGRAAKRSKTKKNLVLIESSEDEA* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01359 702 PANTHER DNA HELICASE RECQ FAMILY MEMBER 66 658 - -
Rops1g01359 702 Pfam HRDC domain 604 663 IPR002121 GO:0003676
Rops1g01359 702 NCBIfam RecQ family ATP-dependent DNA helicase 82 506 IPR004589 GO:0004386|GO:0006310
Rops1g01359 702 FunFam ATP-dependent DNA helicase 46 279 - -
Rops1g01359 702 Gene3D HRDC domain 599 669 IPR044876 -
Rops1g01359 702 CDD SF2_C_RecQ 280 416 - -
Rops1g01359 702 Pfam RecQ zinc-binding 419 475 IPR032284 -
Rops1g01359 702 Coils Coil 3 37 - -
Rops1g01359 702 Pfam DEAD/DEAH box helicase 91 259 IPR011545 GO:0003676|GO:0005524
Rops1g01359 702 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 297 446 IPR001650 -
Rops1g01359 702 FunFam ATP-dependent DNA helicase 480 580 - -
Rops1g01359 702 CDD DEXHc_RecQ1 71 279 - -
Rops1g01359 702 Coils Coil 512 532 - -
Rops1g01359 702 SMART ultradead3 85 288 IPR014001 -
Rops1g01359 702 Pfam Helicase conserved C-terminal domain 302 406 IPR001650 -
Rops1g01359 702 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Rops1g01359 702 FunFam ATP-dependent DNA helicase 599 669 - -
Rops1g01359 702 SMART helicmild6 326 407 IPR001650 -
Rops1g01359 702 Gene3D - 44 279 IPR027417 -
Rops1g01359 702 Gene3D - 480 580 IPR036388 -
Rops1g01359 702 ProSiteProfiles HRDC domain profile. 595 674 IPR002121 GO:0003676
Rops1g01359 702 Pfam RQC domain 481 585 IPR018982 GO:0006260|GO:0006281|GO:0043138
Rops1g01359 702 FunFam ATP-dependent DNA helicase 280 476 - -
Rops1g01359 702 Gene3D - 280 477 IPR027417 -
Rops1g01359 702 SUPERFAMILY HRDC-like 604 669 IPR010997 GO:0000166|GO:0044237
Rops1g01359 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 423 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01359 Rops-Chr1 30295603 30305716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01359 315 421 Eukaryotic Initiation Factors Gene Family AT3G19760 20.561 9.69e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01359 K10899 - gmx:100817635 1218.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01359 1 30295603 30305716 Rops1g01359 1 30295603 30305716 ECH