Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01354 ATGGGGTACGACTCGGATAGCCCCTCACAAGATGGGAGGGATGAAGATGATGAAGACGAATATGAGGAGTCTGGCAAGGGTAATCGATTTCTTGGATTCATGTTTGGAAATGTTGATAATTCGGGTGATCTCGATGTTGATTATCTCGACGAGGATGCAAAGGAGCATCTTTCTGCACTGGCTGACAAGCTGGGTCCATCACTGACAGATATAGATTTGTCAGGAAAATCACCACAAACACCGCCCGACGTTGTTGAACAAGACTGTGGTGAAAAAGCTGAAGATGCAGTTGATTACGAAGATATTGATGAAGAGTATGATGGTCCTGAGACTGAAACTGCCAATGAAGAGGACTATTTATTGCCAAAAAAGGAATTTTTCTCTGCTGAAGCCTCTCTTGTAGCTTTGGAGTCCAAAGCTTCTGTCTTTGATGATGAAAATTATGATGAAGAATCTGAAAAGGAACAAGACTTAGTGAATAGTGATTCTAAAGTTGATAACATCTCTGTAACTGGGGAGCAGGAAGAGAATTTTGTAGATGCATCTGGAGGAGAGAGTGTTCTAGAACACGATTTACAACTTGGCTCACTGCAGACTGAAGAATTGGACACTGATGTACAAAAACTGGAGGAGGAAGGACCTGAAGTTTTGAAAAGGTCTATGTCTACACCATTGCCCGTTTTGTATGTGGAAGATGGGATGGCAATTTTACGCTTCTCTGAAATCTTTTGTATTCAAGAACCCCCCAGAAAGGGAGAAAAGAGAGAGCATCGGCATTCCATTCCTGGAGATAGATACAAGTATTTGGAATTATCTGATGATATTGTAGAAGAGGATGAAGAGGAATTCCTCAAAGGCTTCTGTCAGAGTCTCTCACTTACTAAACAAGTTTGTTTAGTCCGTAATGATGTATCTGAAAGCAATGATGTTGACTTGGAATTTCCAAAATTTGGATTTCTTCATGGGGATGCCTCAATGGATGTGAAAGATGATCGGCAACCAAAGGACTCTTGTCTTAGTGCTGAACCAATGAAAGGGGATTCCGCAGAAGATCTTTCCTGGAAAGATCGTCCTCTTATGTGGGCCAACTTTTATCCTCTTGATCAGCGAGATTGGGAAGATGAAATCCTTTGGGGCAATTCTCCCGTTGCAAGCGATAATAATGTTGAGAGTGGTGAAATTTCTGGACCTGAATTGGGAGCTTCTGGTGGCAGTGAAATGGAAATTGAAAGTGGGATCCAAAATCTTCAGTTGGCTCCCCAGAAGATACCAGAGGAGAAAGATCATAATGTCTTAATGCGCTGCTCTCCTGACTCATTGGAGCCCTTTGGCTCAAGGGATTCTTCTGGAGCTGAAACCGATTTAATGTCCACAAGTGTATTTCATCCCCAACTTCTGAGGCTAGAATCCAGATATGAAGTGGATGGTTCTAGTCTTGCGGATGGAAGAGGGGCAGATATATCTGAGAAGCATGATCAAAGTGGTCAAGTAAAGCGTTTTACCAAGGTCATGTCACGAAACAGAGACCTGATGGAGGACTCGTGGTTAGACAAGATAATATGGGAGGAGCTTGATCGGCCTATGATGAAACCAAAGCTTATATTTGATCTTCAGGATGATCAAATGCACTTTGAAGTTTTGGATAGGAAGGATGGTACACATCTTCACCTTCATGCTGGTGCTATGATTTTAACTCGTTCTTTAAAAATGAGCGCTGGGGACTCTTCTGAACTACCGGGACATGGAGGTCCATATGGATGGCGATACGTTGCTAATGACAAACACTATTCAAACCGGAAAACTTCTCAGCAACTGAAATCAAATTCGAAAAAACGCTCAGCTCATGGTGTTAAAGTTTTTCACTCACAACCTGCACTGAAGCTGCAGACAATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCACCGGCCTAAAGCATTATGGTATCCCCATGACAATGAGGTGGCTGTCAAAGAACAAGGGAAATTGCCAACAAAAGGACCCATGAAAATTATTATGAAGAGCTTGGGTGGCAAGGGGAGCAAACTGCATGTTGATGCTGAAGAAACTCTCTCTTCTGTTATAGCAAAAGCTTCCAAAAAGCTAGATTTCAAGACATCAGAAACAGTGAAAATATTTTATTTAGGGAGGGAGCTTGAAGATCAAAAATCACTTGCTGCACAAAATGTTCAACCAAACTCCTTGTTACATGTAGTCCGTACAAAGATACATTTGTGGCCAAGGGCACAAAGGGTTCCTGGTGAGAATAAATCTTTGCGTCCTCCGGGGGCATTCAAGAAAAAGTCTGATCTGTCTGTGAAAGACGGACATGTTTTTCTTATGGAGTATTGTGAAGAAAGGCCTTTACTTTTGAGCAACGTTGGAATGGGTGCAAGACTTTGTACATACTATCAAAAATCTTCACCAGACGACCAATCTGGCTCTTTGTTACGCAACACAGATAGTAGCTTGGGGCACATCATTTCTCTGGACCCTGCTGATAAATCACCTTTTATCGGAGATTTAAAACCTAGTTGCAGTCAGTCATCACTTGAGACAAACATGTATAGAGCACCCATATTTCCACATAAAGTTCCATTAACTGACTACCTGCTGGTTCGTTCATCAAAGGGAAAGCTATCATTAAGGCGTATCGATAAAATTAATGTTGTTGGACAGCAGGAGCCTCTCATGGAGGTATTATCACCTGGAAGTAAGAATCTTCAGACTTACATGATGAACAGGCTATTGGTACACATGTGCCGTGAATTCCAAGCAGCGGAGAAGCGACACTCGCCTCCATGCATTCGTATTGATGAATTACTGTCACAGTTTCCTTACCAATCAGAAGCTTCATTCCGTAAGAAAATCAAGGAATTTGCCAATTTACAGAGGGGAGCAAATGGACAGTCAATTTTGGTTAAAAAGCGAAATTTTCGCATGTGGTCGGAGGATGAATTGAGAAAAATGGTGACACCAGAGCTTGTTTGTGCCTATGAAAGCATGCAAGCTGGCCTCTACCGCTTAAAACATTTAGGAATAACTGAAACACATCCTAATAATATTTCATCTGCAATGAGTCGGCTTCCTGATGAAGCGATTGCTCTGGCTGCTGCATCACACATCGAGAGAGAACTGCAAATTACTCCTTGGAACTTGAGTAGCAATTTTGTTGCCTGTACAAGCCAGGGTAAGGAAAATATTGAACGAATGGAAATTACTGGTGTTGGTGATCCATCTGGCCGTGGCATGGGTTTTAGCTATGCTCGGGCACCTCCAAAGGCACCAGTTTCTAGTGCAATGGTAAAGAAGAAAGCAGCTGCTGGCCGGGGAGGTTCCACTGTTACTGGTACAGATGCTGATCTACGTAGATTAAGCATGGAGGCTGCACGAGAGGTTCTTCTTAAGTTCAATGTTCCTGAGGAAGTCATTGCAAAACAAACCAGGTGGCATCGCATTGCTATGATACGCAAACTTTCAAGTGAGCAAGCTGCATCTGGGGTTAAGGTTGATCCAACGACTATCAGCAAATATGCCCGTGGCCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACCAGAGAGAAGTGCCAGGAGATTTGGGATCGACAAGTTCAGAGTTTGTCAGCTGTAAATGGTGATGAAAATGAAAGTGATTCAGAAGAGAATAGTGATCTAGATTCTTTTGCTGGAGATCTAGAAAATTTACTTGATGCTGAGGAGTGCGAAGAGGGAGAAGAGGGTACCAATGACTTAAAACGTGATAAGGGAGATGGTGTTAAGGGTCTTAAAATGAGAAGACGCCCAACTTTGGCTCAGGCAGAGGAGGAAATAGAAGATGAAGCAGCTGAGGCTGCTGAATTGCGCAGGTTGCTTATGGATGATGATGAAGCTGACAGGAAGAGAAAGAAGAAAGCTAGGATTGTGGTGGAAGAAGCAAGATTGATGCCGAAGCTGCAACCAAAATTCGTCTTTGACAACACTGAATCAGTTAAGCAAATAACAAATACATTGCAACTAGATGGAACCAATCATTTTAAAGAGGATGCAATTACAGATCTCAAGGAGGAGGAAAACTTTCCTGCTAAAAAAAGTAAATCACTGAAGGTCAATAAAACAAAGAAGATTGACATTACTCCTATTAGTCTACCCAATAAAAAAATCAAATTAAATATGGGAGAAGGTATCAAGGTATTTAAGGAGAAAAAACCATCAAGGGAAACTTTTGTTTGTGGTGCATGTGGCCAGCTTGGGCACATGCGAACAAACAAGAACTGTCCGAAATATGGTGAAGATCCAGAAGCGCTACTTGAATCAATAGATATGGAGAAATCATCTGGGAAATCCATCTTTGTGGATCCATCTAGTCAGTCCCAGCATAAAGTCCCCTCCAAAAAGTCAATATCAAAAAGCGCAACAAAAATTGCTCCAGTTGACAATTCAACAAAAATTCCATTGAAATTCAAATGCGGCTCCACAGAGAAATCTTCTGATAAACCTGCAATAGAAACCATGCAGAGTTATGACAAGCCAGTCACTTCTGACTCAGAAACTGCCAAGTCTGCCAAGGTTAATAAGATAATTATTCCCAACAAAGTGAAACCAGATGATACACAGACTGAATCTCTTAAGCATGCTATTGTTATACGGCCTCCTACTGATTCAGGTAGAGGCCAGGTTGATTCTCATAAGTTCCCAATTAAAATACGCCCGCCTACTGAAATAGATAGGGAGCAAAGTCACAAAAAGATCATTATAAAACGTACAAAGGAGGTTATTGATCTGGAACTGGACAGCCCTGGTGGAAACACAGGACTCGAACACAGAAAAACTAAAAGAATTGTTGAATTGTCGAATTTTGAAAAGCACAGAGAGCAGGAGTCCATGTACTCAACTGAGGGTTTGGTGAAATGGAAAGCTAAAGAGGATAGAAGATGGTGGGAAGAGCAAGAGAAGCGGAGAAATGAAGCGAGACTCAAAGAAGACAGAGCAAGGAGGCATCACAAAGAAGAAATCAGGATGCTCAAAGAGCAAGAAAAGTTAGACGAGATAAGAAGATATGAAGAAGATATTAGAAGAGAGAGGGAGGAGGAAGAACGGCAAAAAGCTAAGAAGAAAAAGAAGAAGAAAAAGCCTGATTTAAGAGAGGAGTATTTCGATGACCCCAGAGCAAGAAGATATGATAAGAGGATGCTAGAAAGAGAACGCAGCGGAAAAAGGAGATCTGTTGTTGAGTTAGGAAAAACGGCTGCAGATTATATGCCGCCAACAAAACGCCGAAGAGGTGGAGGGGGGGAGGTTGGTTTGGCTAATGTCTTGGAGAGCATTGTGGACGCCATTGTGAAAGATAGGTATGATCTGTCTTATCTTTTCCTGAAACCGGTGTCCAAGAAAGAGGCTCCTGACTACCTGGACATCATAGAGAGGCCTATGGATCTTTCCAGAATCCGGGAGAGGGTACGGAATATGGAGTACAGGAGCCGAGAAGATTTCAGACATGATATGTGGCAGATCACTTTCAATGCCCATAAATACAACGATGGACGAAATCCTGGAATTCCTCCCCTTGCGGATATGCTTTTGGAATATTGTGATTATTTATTAAATGAGAATGACGAGAGCCTCACTGCGGCAGAATCTGGTATTGAAATTAGAGATTTCTGA 5670 0.4199 MGYDSDSPSQDGRDEDDEDEYEESGKGNRFLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGPSLTDIDLSGKSPQTPPDVVEQDCGEKAEDAVDYEDIDEEYDGPETETANEEDYLLPKKEFFSAEASLVALESKASVFDDENYDEESEKEQDLVNSDSKVDNISVTGEQEENFVDASGGESVLEHDLQLGSLQTEELDTDVQKLEEEGPEVLKRSMSTPLPVLYVEDGMAILRFSEIFCIQEPPRKGEKREHRHSIPGDRYKYLELSDDIVEEDEEEFLKGFCQSLSLTKQVCLVRNDVSESNDVDLEFPKFGFLHGDASMDVKDDRQPKDSCLSAEPMKGDSAEDLSWKDRPLMWANFYPLDQRDWEDEILWGNSPVASDNNVESGEISGPELGASGGSEMEIESGIQNLQLAPQKIPEEKDHNVLMRCSPDSLEPFGSRDSSGAETDLMSTSVFHPQLLRLESRYEVDGSSLADGRGADISEKHDQSGQVKRFTKVMSRNRDLMEDSWLDKIIWEELDRPMMKPKLIFDLQDDQMHFEVLDRKDGTHLHLHAGAMILTRSLKMSAGDSSELPGHGGPYGWRYVANDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPKALWYPHDNEVAVKEQGKLPTKGPMKIIMKSLGGKGSKLHVDAEETLSSVIAKASKKLDFKTSETVKIFYLGRELEDQKSLAAQNVQPNSLLHVVRTKIHLWPRAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNVGMGARLCTYYQKSSPDDQSGSLLRNTDSSLGHIISLDPADKSPFIGDLKPSCSQSSLETNMYRAPIFPHKVPLTDYLLVRSSKGKLSLRRIDKINVVGQQEPLMEVLSPGSKNLQTYMMNRLLVHMCREFQAAEKRHSPPCIRIDELLSQFPYQSEASFRKKIKEFANLQRGANGQSILVKKRNFRMWSEDELRKMVTPELVCAYESMQAGLYRLKHLGITETHPNNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERMEITGVGDPSGRGMGFSYARAPPKAPVSSAMVKKKAAAGRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNGDENESDSEENSDLDSFAGDLENLLDAEECEEGEEGTNDLKRDKGDGVKGLKMRRRPTLAQAEEEIEDEAAEAAELRRLLMDDDEADRKRKKKARIVVEEARLMPKLQPKFVFDNTESVKQITNTLQLDGTNHFKEDAITDLKEEENFPAKKSKSLKVNKTKKIDITPISLPNKKIKLNMGEGIKVFKEKKPSRETFVCGACGQLGHMRTNKNCPKYGEDPEALLESIDMEKSSGKSIFVDPSSQSQHKVPSKKSISKSATKIAPVDNSTKIPLKFKCGSTEKSSDKPAIETMQSYDKPVTSDSETAKSAKVNKIIIPNKVKPDDTQTESLKHAIVIRPPTDSGRGQVDSHKFPIKIRPPTEIDREQSHKKIIIKRTKEVIDLELDSPGGNTGLEHRKTKRIVELSNFEKHREQESMYSTEGLVKWKAKEDRRWWEEQEKRRNEARLKEDRARRHHKEEIRMLKEQEKLDEIRRYEEDIRREREEEERQKAKKKKKKKKPDLREEYFDDPRARRYDKRMLERERSGKRRSVVELGKTAADYMPPTKRRRGGGGEVGLANVLESIVDAIVKDRYDLSYLFLKPVSKKEAPDYLDIIERPMDLSRIRERVRNMEYRSREDFRHDMWQITFNAHKYNDGRNPGIPPLADMLLEYCDYLLNENDESLTAAESGIEIRDF* 1890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01354 1889 MobiDBLite consensus disorder prediction 93 114 - -
Rops1g01354 1889 Gene3D - 21 68 IPR036741 -
Rops1g01354 1889 PRINTS Bromodomain signature 1788 1801 IPR001487 GO:0005515
Rops1g01354 1889 PRINTS Bromodomain signature 1802 1818 IPR001487 GO:0005515
Rops1g01354 1889 PRINTS Bromodomain signature 1836 1855 IPR001487 GO:0005515
Rops1g01354 1889 PRINTS Bromodomain signature 1818 1836 IPR001487 GO:0005515
Rops1g01354 1889 MobiDBLite consensus disorder prediction 330 350 - -
Rops1g01354 1889 MobiDBLite consensus disorder prediction 1499 1523 - -
Rops1g01354 1889 MobiDBLite consensus disorder prediction 1244 1278 - -
Rops1g01354 1889 CDD Bromodomain 1775 1870 - -
Rops1g01354 1889 Gene3D - 653 743 - -
Rops1g01354 1889 FunFam Transcription initiation factor TFIID subunit 1 653 743 - -
Rops1g01354 1889 SUPERFAMILY TAF(II)230 TBP-binding fragment 24 62 IPR036741 -
Rops1g01354 1889 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 13 1887 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Rops1g01354 1889 MobiDBLite consensus disorder prediction 1645 1679 - -
Rops1g01354 1889 MobiDBLite consensus disorder prediction 1492 1523 - -
Rops1g01354 1889 Pfam Zinc knuckle 1413 1432 IPR041670 -
Rops1g01354 1889 CDD Ubl_TAFs_like 671 742 - -
Rops1g01354 1889 MobiDBLite consensus disorder prediction 1563 1581 - -
Rops1g01354 1889 Pfam Ubiquitin family 675 743 IPR000626 GO:0005515
Rops1g01354 1889 Pfam Bromodomain 1776 1851 IPR001487 GO:0005515
Rops1g01354 1889 ProSitePatterns Bromodomain signature. 1790 1847 IPR018359 -
Rops1g01354 1889 SMART bromo_6 1764 1875 IPR001487 GO:0005515
Rops1g01354 1889 Pfam Protein of unknown function (DUF3591) 591 1157 IPR022591 -
Rops1g01354 1889 SUPERFAMILY Bromodomain 1754 1873 IPR036427 GO:0005515
Rops1g01354 1889 SUPERFAMILY Ubiquitin-like 641 741 IPR029071 -
Rops1g01354 1889 MobiDBLite consensus disorder prediction 66 115 - -
Rops1g01354 1889 MobiDBLite consensus disorder prediction 1550 1581 - -
Rops1g01354 1889 Coils Coil 1273 1293 - -
Rops1g01354 1889 MobiDBLite consensus disorder prediction 1695 1720 - -
Rops1g01354 1889 ProSiteProfiles Ubiquitin domain profile. 671 741 IPR000626 GO:0005515
Rops1g01354 1889 MobiDBLite consensus disorder prediction 1249 1277 - -
Rops1g01354 1889 SMART ubq_7 671 743 IPR000626 GO:0005515
Rops1g01354 1889 Coils Coil 1679 1713 - -
Rops1g01354 1889 MobiDBLite consensus disorder prediction 1452 1476 - -
Rops1g01354 1889 ProSiteProfiles Bromodomain profile. 1785 1855 IPR001487 GO:0005515
Rops1g01354 1889 Pfam TATA box-binding protein binding 18 61 IPR009067 -
Rops1g01354 1889 MobiDBLite consensus disorder prediction 1 30 - -
Rops1g01354 1889 Gene3D - 1765 1887 IPR036427 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01354 671 741 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 35.211 4.16e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01354 K03125 - gmx:100780733 3188.28