Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops1g01352 | ATGGCAGATGAAGATGGTCATCATCATCCATTATCTGACAACGTTATTGTCCTACTTATTGCCATGGGTTCAGCAGCTTTTGTTGTCTCAATGTACCATGTCATTGCCATTTGTTTATGCCACCAACGCATCACAGATCAAAACCCCCCAGAACAGCAGCCACCACAACATATGATCCAAAGCCTCAACCAAAGCACTTCCTCAGTGACACACTTGATTCCAACACACAAGTATCACAAGAAGAAAAAAGTTGACATGGTTTCACATGATGTTGTTGGTGATGGTGATGATGATGATGGCACTTGTGCTGTGTGCTTAGGAGATTTTGAAGAGGGTGAGGAGTTGAAAACTTTGCCTGAATGCATGCACTCTTTCCATGTACCATGCATTGATATGTGGCTCAATTCACATTCAAGTTGCCCTGTTTGCCGTGCCAGTGCTAGTGTCACCCCTTCTCCAGCGGTTCTCCACCACCGTGACGGTGATTTGAATGCACATCATCACAGCATTAATATGACACCAGTTGCTTTCCTCCATAATGGGTTGGTAAGAAGGTGA | 558 | 0.4444 | MADEDGHHHPLSDNVIVLLIAMGSAAFVVSMYHVIAICLCHQRITDQNPPEQQPPQHMIQSLNQSTSSVTHLIPTHKYHKKKKVDMVSHDVVGDGDDDDGTCAVCLGDFEEGEELKTLPECMHSFHVPCIDMWLNSHSSCPVCRASASVTPSPAVLHHRDGDLNAHHHSINMTPVAFLHNGLVRR* | 186 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops1g01352 | 185 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 9 | 149 | IPR044675 | - | |
Rops1g01352 | 185 | ProSiteProfiles | Zinc finger RING-type profile. | 102 | 144 | IPR001841 | - | |
Rops1g01352 | 185 | CDD | RING-H2_EL5-like | 102 | 144 | - | - | |
Rops1g01352 | 185 | SUPERFAMILY | RING/U-box | 95 | 149 | - | - | |
Rops1g01352 | 185 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 51 | 149 | IPR013083 | - | |
Rops1g01352 | 185 | SMART | ring_2 | 102 | 143 | IPR001841 | - | |
Rops1g01352 | 185 | Pfam | Ring finger domain | 101 | 144 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops1g01352 | Rops-Chr1 | 30197960 | 30198517 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops1g01352 | 4 | 163 | C3H Transcription Factor Family | AT3G10910 | 31.902 | 1.24e-21 | 85.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops1g01352 | - | - | gmx:102660266 | 211.46 |