Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01352 ATGGCAGATGAAGATGGTCATCATCATCCATTATCTGACAACGTTATTGTCCTACTTATTGCCATGGGTTCAGCAGCTTTTGTTGTCTCAATGTACCATGTCATTGCCATTTGTTTATGCCACCAACGCATCACAGATCAAAACCCCCCAGAACAGCAGCCACCACAACATATGATCCAAAGCCTCAACCAAAGCACTTCCTCAGTGACACACTTGATTCCAACACACAAGTATCACAAGAAGAAAAAAGTTGACATGGTTTCACATGATGTTGTTGGTGATGGTGATGATGATGATGGCACTTGTGCTGTGTGCTTAGGAGATTTTGAAGAGGGTGAGGAGTTGAAAACTTTGCCTGAATGCATGCACTCTTTCCATGTACCATGCATTGATATGTGGCTCAATTCACATTCAAGTTGCCCTGTTTGCCGTGCCAGTGCTAGTGTCACCCCTTCTCCAGCGGTTCTCCACCACCGTGACGGTGATTTGAATGCACATCATCACAGCATTAATATGACACCAGTTGCTTTCCTCCATAATGGGTTGGTAAGAAGGTGA 558 0.4444 MADEDGHHHPLSDNVIVLLIAMGSAAFVVSMYHVIAICLCHQRITDQNPPEQQPPQHMIQSLNQSTSSVTHLIPTHKYHKKKKVDMVSHDVVGDGDDDDGTCAVCLGDFEEGEELKTLPECMHSFHVPCIDMWLNSHSSCPVCRASASVTPSPAVLHHRDGDLNAHHHSINMTPVAFLHNGLVRR* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01352 185 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 9 149 IPR044675 -
Rops1g01352 185 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Rops1g01352 185 CDD RING-H2_EL5-like 102 144 - -
Rops1g01352 185 SUPERFAMILY RING/U-box 95 149 - -
Rops1g01352 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 149 IPR013083 -
Rops1g01352 185 SMART ring_2 102 143 IPR001841 -
Rops1g01352 185 Pfam Ring finger domain 101 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01352 Rops-Chr1 30197960 30198517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01352 4 163 C3H Transcription Factor Family AT3G10910 31.902 1.24e-21 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01352 - - gmx:102660266 211.46