Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01346 ATGGAGTCCAATGAGAATGAGAGCTGGTCAGTTAGAGAGGTCCATGCAAATGGAAGCAGCATGATTGCATCAGAAGTTGAGGCCAAGCTTGATGAAGGAAATATTCAAGAGGCAGAATCTGCATTAAGAGAAGGCTTGTCACTCAATTTTGAGGAAGCAAGAGCTCTGCTTGGGAAGTTGGAGTATCAGAGAGGTAATGTAGAAGGTGCTCTCCGTGTGTTTGATGGGATTGATCTCCAAGCTGCCATACAGCGATTGCAACCCTCATTTTCTGAAAAACCTTCAGTCAAAAAAGGTCGTAGTCGCACTGAATCACCTTCTTCAGTCTCTCAGCATGCTGCTAGTTTGGTGCTTGAAGCCATCTACTTAAAAGCCAAGTCTCTACAAAAACTTGGGAAATTTACTGAAGCTGCTAATGATTGTAAACGTGTTCTTGATGCTGTTGAGAAGATATTTTATCAGGGTATACCTGATATTCAAGTGGATAATAAATTGCAAGAGATAGTCAGCCATGCAGTAGAGCTCCTTCCAGAGCTTTGGAAACAAGCTGGTTGCTACGATGAGGCAGTCTCTGCATATAGGCGTGCCCTTCTTAGTCAGTGGAACCTTGATAATGATTGCTGTGCAAGAATTCAGAAATCGTTTGTTGTATTTTTACTGTACAGTGGGGTGGAAGCAAGTCCACCTAGCTTGGCAGTTCAGATTGAAGGGTCTTATGTGCCTAAAAATAATCTTGAAGAGGCAATTCTACTTTTAATGATTCTTATAAGAAAGTTTTGCCTTGGTAAGACAAAATGGGACCCTTCAGTCATGGAACACCTGACTTTTGCACTTTCTGTATGTAGCCAAACTTCTTTTTTAGCAAAGCAATTTGAAGACTTGGTGCCTGGAGTATACCATCGCATTGATCGTTGGAATTCGTTAGCTTTATGTCATAGTGCAGCTGGACAAAATGACAGTGCTTTGAATCTGCTTAGGAAGTCTTTGCACACGCAAGAACAACCAAATGACCTTGCATCATTATTGTTAGCTGCTAGGATCTGCAGTGAGAATCCCCATCTTGCTGCTGAGGGAGTGGGCTATGCACAGAGGGCAATCAGTAATGCTCATGGCCTGAATGAGCATTTAAAAGGTGTTGCTCTTCGGATGTTGGGACTTTGTCTGGGAAAGCAAGCTAAGGTTGCTTCCTCTGACTTTGATAGGTCTCGCCTTCAATCCAAAGCACTGGAGTCATTGGAGGAGGCAACTAGATTGGAGCAAAACAGTTCTGATCTGATTTTTGAGTTGGCTGTTCAATATGCAGAGCACCGAAATTTGACTGCTGCTTTGCGCTCTGCTAGGCGTTACTTTAATGAAACCGGGGGCTCTATATTGAAAGCTTGGATATTGCTTGCTCTGATTTTGTCTGCACAACAAAAGTTTCCGGAAGCTGAAGTGGTGACAGATGCTGCTTTAGATCAGACTGCAAGATGGGAGCAGGGGCCACTGCTTAGTCTGAAAGCTAAGCTGAAGATCTACCAGTCACGACCCATGGATGCTATTGAAACTTATCGCTACCTTCTAGCATTGGTTCAAGCCCAGAGGAAATCCTTTGGGCCTTTCCGAATTAGTTCAAAGGTTGAGGATGATAAAGTAAATGAATTTGATATATGGCATGGTCTGGCAAATTTATATGCTAGCCTTTCTCATTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCCAGGGAGTTGAAGGAGTACTCTGCTGCAATAATGCACACCAAAGGTGTTTTGTTTGAAGGACGTGGGAAAAATCAAGAAGCTCTTGACGCTACTTTTAATGCTGTCTTGCTTGAACCAAACTATGTTCCAAGCAAGATCCTGATGGGAGCTTTGATTCAGAAAATGGGTTCAAGAAATGCTTTGCCTGTTGCAAGAAGCTTGCTGTCTGATGCACTTAGAATAGAACCCACTAACCGCATGGCTTGGTACTATTTGGGATTGGTGCATAAACATGATGGCCGAATGAGTGATGCTGCTGACTGCTTCCAAGCAGTCTCCATGCTTGAAGAATCTGATCCGATTGAAAGTTTCAGCACCTTACTTTGA 2088 0.431 MESNENESWSVREVHANGSSMIASEVEAKLDEGNIQEAESALREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPSFSEKPSVKKGRSRTESPSSVSQHAASLVLEAIYLKAKSLQKLGKFTEAANDCKRVLDAVEKIFYQGIPDIQVDNKLQEIVSHAVELLPELWKQAGCYDEAVSAYRRALLSQWNLDNDCCARIQKSFVVFLLYSGVEASPPSLAVQIEGSYVPKNNLEEAILLLMILIRKFCLGKTKWDPSVMEHLTFALSVCSQTSFLAKQFEDLVPGVYHRIDRWNSLALCHSAAGQNDSALNLLRKSLHTQEQPNDLASLLLAARICSENPHLAAEGVGYAQRAISNAHGLNEHLKGVALRMLGLCLGKQAKVASSDFDRSRLQSKALESLEEATRLEQNSSDLIFELAVQYAEHRNLTAALRSARRYFNETGGSILKAWILLALILSAQQKFPEAEVVTDAALDQTARWEQGPLLSLKAKLKIYQSRPMDAIETYRYLLALVQAQRKSFGPFRISSKVEDDKVNEFDIWHGLANLYASLSHWKDAEICLQKARELKEYSAAIMHTKGVLFEGRGKNQEALDATFNAVLLEPNYVPSKILMGALIQKMGSRNALPVARSLLSDALRIEPTNRMAWYYLGLVHKHDGRMSDAADCFQAVSMLEESDPIESFSTLL* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01346 695 PANTHER PROTEIN NPG1 5 692 IPR043376 -
Rops1g01346 695 SUPERFAMILY TPR-like 499 681 IPR011990 GO:0005515
Rops1g01346 695 Coils Coil 401 421 - -
Rops1g01346 695 SMART tpr_5 118 151 IPR019734 GO:0005515
Rops1g01346 695 SMART tpr_5 302 335 IPR019734 GO:0005515
Rops1g01346 695 SMART tpr_5 458 491 IPR019734 GO:0005515
Rops1g01346 695 SMART tpr_5 548 581 IPR019734 GO:0005515
Rops1g01346 695 SMART tpr_5 653 686 IPR019734 GO:0005515
Rops1g01346 695 SMART tpr_5 582 615 IPR019734 GO:0005515
Rops1g01346 695 SUPERFAMILY TPR-like 53 448 IPR011990 GO:0005515
Rops1g01346 695 Gene3D Tetratricopeptide repeat domain 21 214 IPR011990 GO:0005515
Rops1g01346 695 Gene3D Tetratricopeptide repeat domain 238 531 IPR011990 GO:0005515
Rops1g01346 695 Gene3D Tetratricopeptide repeat domain 534 688 IPR011990 GO:0005515
Rops1g01346 695 FunFam NPG1 539 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01346 Rops-Chr1 30123580 30130155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01346 3 695 Calmodulin-binding Proteins AT2G43040 72.270 0.0 998
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01346 K21843 - gmx:100814609 1165.98