Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01338 ATGGCTGTGAATCTGACTCAAGGTGCGATAATGACGATGTGCAATGGCAATTTCTCTTCGGAGGAGTTGGAACCGGTGCTGCAAGTTATCGACGTCAAGCGTGTGCAGTCGCAGCAGAGCAGCTCATCGGAGAGGTACCGGCTTGTGCTATCGGACGGTTCGTATTATCAGCAAGGGATGCTCGCCACGCAGAAGAACGATTTGGTACATTCTGGAAGGTTGCAAAAAGGTTCCATTGTTAAACTCACTCAGTTCGTCTGCAATGATGTCCAGAACCGCAAGATTATTATCATTATGGAGCTAGATGTTATACTGGACAAATGTGATCTGATTGGAGAACCTGTCTCAGCTCCAAGAAATGCACCTGCACAATCTGCCACTGGTCAATCAGGAATCACCTCTGGGAATTCACGGTCTTTAAATAGTAATTCATATGCAGGTGGCATGACTGCTAGACCCAATGTGACTGGGCATTCTCCAGATCATCCACAAGTGAATACTCCTGCTGGTAGTGTTTATTCGAACAGTTCTGACTCTGTGAGATATGGTGCATCTAATGCCCCTCCTATTTATCCTAAAGCAGAGCCGGGAGTCAGTTTACCTAGATCAGCACCATTCAGTGGGTCTTACGGTGATCAGAACACAGGCTTCCGCAATCCCCAATATGAGGCTTCAAGGCCAATGCAAAATTCACATGCTCGCCCACCTCAGCCTATGTATCGACAACCATCTCCAATGTACTCAAACAGAGGGCCTGTAGGAAGAAATGAAGCTCCCCCCAGGATAATTCCAATAGCTGCATTGAATCCATACCAGAATATGTGGACAATAAAAGCCAGAGTAACAGCTAAGGGAGAACTTAGGCACTATAATAATGCCCGAGGCGATGGCAAAGTATTTTCTTTTGATCTTCTTGATTCTGATGGTGGAGAAATTCGGGCAACTTGCTTTAATGCTGTGGCTGATCAGTTCTATAATGTAATTGAAGTTGGTAAAGTCTATCTGGTTTCCAGAGGAAGCATAAAGCCAGCTCAAAAGAATTTTAATCACCTTCGTAATGATCAAGAGCTAACCCTTGATATTACATCAATTATACAGCCATGCCTTGATGATGATAACTCAATTCCAAAACAGACATTTAATTTTCGTCCCATTAGTGAAATTGAAAGTATGGAAAACAATAGCATTGTGGATGTGATTGCAGTGGTGTCTTCTATTAGTCCTACAGCTTCAATCATGAGAAAAAATGGCACTGAAACACAGAAAAGAACTCTCCAGTTGAAAGACATGTCTGGCCGAAGTGTTGAATTAACTTTATGGGGAAATTTTTGCAATGCAGAAGGACAAAGGCTGCAAAGTATGTGTGATTCCGGGGCATTTCCAGTTTTAGCTGTAAAAGGTGCCCGAATAAATGATTTCAATGGGAAGTCTGTTGGGACCATAGCCACTAGCCAGCTATTTGTAGAACCTGATTTTGCAGAGGCCTATGCACTGAGAGAATGGTTTGACAAGGAAGGGAAGAATGTCCCGACCCTCTCTATTTCCAGAGAAGCATCTAGTTTTGGAAAGACTGATGTGCGGAAGACTATATCTCAGATTAAAGATGAGAAGTTAGGGACATCGGAGAAGCCTGATTGGATATCTGTCTGTGCAAGTGTTGCATTCATTAAAGTTGATAACTTCTGCTACACAGCTTGCCCTGTCATGATAGGGGATAGGCAATGTAATAAAAAGGTTACCAATAACGGAGATGGGAAATGGCATTGTGACAGGTGTGATCAGTCTGTCGATGCTTGTGATTATAGGTACATACTACAATTCCAGATACAGGATCACACTGGCATTACATGGGTTACTGCTTTCCAGGAGGGTGGTGAGGAGATCATGGGTATACCTGCAAAAGATTTGTTTTATCTGAAATTTGAAGAACAAGATGATGAAAAATTTGCAGAAATCATCCGCAAGGTTCTCTTCTCTAAATACGTGTTCAAGTTAAAAGTAAAGGAGGAAATATTCAGTGATGAACAACGTGTCAAGTCAACAGTAGTCAAAGCAGAGAAGGTAAACTTCGCATCTGAATCTAGAGTTCTGTTGGATTTGATTGATAAACTTAAGTCTGAGAAAGCAGAAGGTACCACTCCTAACTCTGTCATCAACAATACTACTGGACTGGGGAGCGTTCAAACTGGGCAAGCTATGCCACCAGTTTATACTCCTATAAAGAGCAACACTAATACTGCTAGAGATTATGGGATGCCAGCAAACCAAGCGGGTCAGTATGGAAACCAATATAGCAGTTCTTTTGTTTCATCAGGGGCTCCTGGTTCATACATGTCATGCAACAACTGTGGAGGCTCTGGGCATTACTTTGCACAATGCCCAAATATTAGAAACCGTCCTGGACAGTCTGCGGGAGGGGCCTATGCAAACAGTGTATCTGCTGGATCAGGTGTTACCTCTGGTGAATGCTTTAAATGCCATCAAACTGGCCATTGGGCAAGAGACTGTCCTGGTCTCGGTGCAGCACCTCCAGCTTATGGAAGCAGTAATGTAATGCAAGGAAGATATGGGATTGCTCAAAAGCAACAATTTGGAGGATATTGA 2604 0.4309 MAVNLTQGAIMTMCNGNFSSEELEPVLQVIDVKRVQSQQSSSSERYRLVLSDGSYYQQGMLATQKNDLVHSGRLQKGSIVKLTQFVCNDVQNRKIIIIMELDVILDKCDLIGEPVSAPRNAPAQSATGQSGITSGNSRSLNSNSYAGGMTARPNVTGHSPDHPQVNTPAGSVYSNSSDSVRYGASNAPPIYPKAEPGVSLPRSAPFSGSYGDQNTGFRNPQYEASRPMQNSHARPPQPMYRQPSPMYSNRGPVGRNEAPPRIIPIAALNPYQNMWTIKARVTAKGELRHYNNARGDGKVFSFDLLDSDGGEIRATCFNAVADQFYNVIEVGKVYLVSRGSIKPAQKNFNHLRNDQELTLDITSIIQPCLDDDNSIPKQTFNFRPISEIESMENNSIVDVIAVVSSISPTASIMRKNGTETQKRTLQLKDMSGRSVELTLWGNFCNAEGQRLQSMCDSGAFPVLAVKGARINDFNGKSVGTIATSQLFVEPDFAEAYALREWFDKEGKNVPTLSISREASSFGKTDVRKTISQIKDEKLGTSEKPDWISVCASVAFIKVDNFCYTACPVMIGDRQCNKKVTNNGDGKWHCDRCDQSVDACDYRYILQFQIQDHTGITWVTAFQEGGEEIMGIPAKDLFYLKFEEQDDEKFAEIIRKVLFSKYVFKLKVKEEIFSDEQRVKSTVVKAEKVNFASESRVLLDLIDKLKSEKAEGTTPNSVINNTTGLGSVQTGQAMPPVYTPIKSNTNTARDYGMPANQAGQYGNQYSSSFVSSGAPGSYMSCNNCGGSGHYFAQCPNIRNRPGQSAGGAYANSVSAGSGVTSGECFKCHQTGHWARDCPGLGAAPPAYGSSNVMQGRYGIAQKQQFGGY* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01338 867 MobiDBLite consensus disorder prediction 120 150 - -
Rops1g01338 867 SUPERFAMILY Retrovirus zinc finger-like domains 765 801 IPR036875 GO:0003676|GO:0008270
Rops1g01338 867 SUPERFAMILY Nucleic acid-binding proteins 380 509 IPR012340 -
Rops1g01338 867 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Rops1g01338 867 Pfam Replication protein A OB domain 385 488 IPR031657 -
Rops1g01338 867 ProSiteProfiles Zinc finger CCHC-type profile. 780 795 IPR001878 GO:0003676|GO:0008270
Rops1g01338 867 ProSiteProfiles Zinc finger CCHC-type profile. 823 837 IPR001878 GO:0003676|GO:0008270
Rops1g01338 867 Gene3D - 513 704 IPR012340 -
Rops1g01338 867 SMART c2hcfinal6 779 795 IPR001878 GO:0003676|GO:0008270
Rops1g01338 867 SMART c2hcfinal6 822 838 IPR001878 GO:0003676|GO:0008270
Rops1g01338 867 Gene3D - 374 512 IPR012340 -
Rops1g01338 867 Gene3D - 745 841 - -
Rops1g01338 867 FunFam Replication protein A subunit 513 704 - -
Rops1g01338 867 Pfam Zinc knuckle 822 837 IPR001878 GO:0003676|GO:0008270
Rops1g01338 867 MobiDBLite consensus disorder prediction 119 169 - -
Rops1g01338 867 CDD RPA1_DBD_A 264 366 - -
Rops1g01338 867 CDD RPA1N 8 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Rops1g01338 867 CDD RPA1_DBD_B 396 503 - -
Rops1g01338 867 FunFam Replication protein A subunit 4 118 - -
Rops1g01338 867 MobiDBLite consensus disorder prediction 193 255 - -
Rops1g01338 867 SUPERFAMILY Retrovirus zinc finger-like domains 811 840 IPR036875 GO:0003676|GO:0008270
Rops1g01338 867 NCBIfam replication factor-a protein 1 (rpa1) 236 703 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Rops1g01338 867 MobiDBLite consensus disorder prediction 206 237 - -
Rops1g01338 867 PANTHER REPLICATION FACTOR A 1, RFA1 275 690 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Rops1g01338 867 CDD RPA1_DBD_C 530 703 IPR047192 -
Rops1g01338 867 FunFam Replication protein A subunit 374 512 - -
Rops1g01338 867 SUPERFAMILY Nucleic acid-binding proteins 261 375 IPR012340 -
Rops1g01338 867 Pfam Replication factor-A C terminal domain 546 697 IPR013955 -
Rops1g01338 867 SUPERFAMILY Nucleic acid-binding proteins 1 112 IPR012340 -
Rops1g01338 867 Pfam OB-fold nucleic acid binding domain 275 364 IPR004365 GO:0003676
Rops1g01338 867 SUPERFAMILY Nucleic acid-binding proteins 527 704 IPR012340 -
Rops1g01338 867 Gene3D - 261 371 IPR012340 -
Rops1g01338 867 FunFam Replication protein A subunit 261 371 - -
Rops1g01338 867 Gene3D - 3 117 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01338 Rops-Chr1 29921179 29924713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01338 1 809 Core DNA Replication Machinery Family AT5G45400 52.859 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01338 K07466 - gmx:100778597 1305.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01338 1 29921179 29924713 Rops1g01338 1 29921179 29924713 ECH