Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01317 ATGGCTGCTTCAAGCTCTCTCTTGAGGATGGAGCAAATAGCTGGCAAAGGGAGAGGTCTTGTTGCAACACAACCTCTCAAGGCTGGACAAGTAGCCCTCACAGAATCCCCTCTCATCCTCTACTCAGCTTCTCCTCTCTTCTCTCCACCCTCTTCTTACTGTGACCACTGCTTCAGAATCTTACCACCCACACCAACTGTTCCATGTCCTTCTTGCTCTCACCACCATTTTTGTAGCCACAAGTGCCTCTCCATTGCCCTCAAATTTTCCCACTCTTCTTGGGCTTGCAAAGTACTGTCTCTTCTACAAGACCCCACTTCAGCATTACTTGAACAACCCCTTGAACGTCAAGTGCAAGCTCGTTTCATTGTAGCTGCTTACAACCTTGTCATTCACTCCCCTTCTGATCTGCACACTTTGCTTTCTCTCCATGGTACTCCTGATGCTGCCATACTTGATGCTGCTCAATTTCTTCATTCTCTTATCTCACCACTTTGTCCACCCCAAAGTCACCTTTCTGCTGAACTTGCTGCTCAACTTCTTGCCAAGGATAGGCTCAACTCCTTTTGCTTAATGGATCCTTATTCCCCAGATGGTCCTCAAAGAAACACCAAAGCATATGGCATTTACCCAAAAGCTACCTTCTTTAACCATGAATGTATTCCCAATGCATGCAGGTTTGATTATGTGGATACTAGTGATCCTGGGGATGAACACAACACTGACATTGTTATCAGGTTGATTCAGGATGTTCCTCAAGGAAGAGAGGTCTGCATAAGCTATTTCAGGATCAGCATGGATTACACTACAAGAAAAAGGATCTTGATGGAGGATTATGGGTTCACTTGTGACTGTGATAGGTGCAAGATTGAAGCAAATTGGCCTGATGGCAAAAACCAAGGAGAAAACAGTGACCTGCCACATGTGTGTTTCCTTTCTAAGTATGTTTGTGACAAGAAAAATTGTGCTGGCACTACGGCACCTCTGCCTCCAAAAGACGATGTCCCATCTAATGTTTTGGAGTGTAACTTCTGTGGTAATTTGAAAATTGATTCTGCTTAG 1062 0.4463 MAASSSLLRMEQIAGKGRGLVATQPLKAGQVALTESPLILYSASPLFSPPSSYCDHCFRILPPTPTVPCPSCSHHHFCSHKCLSIALKFSHSSWACKVLSLLQDPTSALLEQPLERQVQARFIVAAYNLVIHSPSDLHTLLSLHGTPDAAILDAAQFLHSLISPLCPPQSHLSAELAAQLLAKDRLNSFCLMDPYSPDGPQRNTKAYGIYPKATFFNHECIPNACRFDYVDTSDPGDEHNTDIVIRLIQDVPQGREVCISYFRISMDYTTRKRILMEDYGFTCDCDRCKIEANWPDGKNQGENSDLPHVCFLSKYVCDKKNCAGTTAPLPPKDDVPSNVLECNFCGNLKIDSA* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01317 353 SUPERFAMILY SET domain 6 284 IPR046341 -
Rops1g01317 353 Gene3D - 53 110 - -
Rops1g01317 353 Gene3D - 111 188 - -
Rops1g01317 353 CDD SET_SMYD 186 288 - -
Rops1g01317 353 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 297 351 IPR044238 -
Rops1g01317 353 Coils Coil 350 353 - -
Rops1g01317 353 ProSiteProfiles SET domain profile. 6 262 IPR001214 GO:0005515
Rops1g01317 353 SMART set_7 6 268 IPR001214 GO:0005515
Rops1g01317 353 Pfam SET domain 17 261 IPR001214 GO:0005515
Rops1g01317 353 Gene3D SET domain 19 289 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01317 Rops-Chr1 29625678 29626739 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops1g01317 SET 3.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01317 - - gmx:100808530 527.709