Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01316 ATGAGCGTTCCTCCTCAGCCGCAGGTGATGTGGACGGCGACTCAACCGCCGTTCACGGTGGCTCAGTGGCAGGAGCTGGAGCACCAAGCCCTCATCTTCAAGTACCTGAAAGCGGGTCTGTCGGTTCCACCTGAACTCCTCGTACCCATTCGGAAAAGTCTTCAATTGATGTCTCACCCTTCTCTGGGGTATTATGGGAAGAAGATAGACCCTGAACCTGGAAGGTGCAGAAGAACCGATGGGAAAAAATGGAGGTGTTCAAGGGATGCACACCCTGATTCTAAGTACTGTGACCGTCATATGATACGACGTCGTTACCGTTCAAGAAAGCCTGTGGAATCTCAATCTCAATCTTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCACAACTTGGTGCTACCACTGGGAGCACAACTACTGTTTCTGCTTCTGCAACTGCAACTGCAACCTTCAATACCCTACCTTTGCATACCAATGGTACTAGGGAAGGTTTCAGTTTCACCCTTGGGAACTCTCTCCCCAACTTTCAGATGGACCCTATGTCTCTTCCTTCTCAGGGTTGTAAGAAACCTTACAGGTTTGGACTGAACTCTGAAGCAGATGAGCACAACATCTTACAGAAAGATCTTGGAAGTGTTAAGTATCAAGGTTATGACTTCACCTCAGATGGCATGTGGTCTCAGATTCCATCAAACACTGTATCAGAATCGCGAAGTGGTTCCATGGTTGGCAACTGCTTCCAACAGCGAACAATGCGAGATGCTGAGCTGTTGAACCTCGACACTGCAAGATCCAAGGAACTTGTATTTAGTGGCCAGTCATGTTCAGGAGGGTTTCTGAAACAGGAATATCAATCTCCTCAGTCTCTCTTCAGTGACTGGCACTGGAAGAAAGATTTAGGTTCCTCTGCCATTGAGTATAGGCCCAACAAGGATTTTAACGTCAACCCAGATGTCAATGTTGATTCAAATGGTTCTTTATGA 984 0.4715 MSVPPQPQVMWTATQPPFTVAQWQELEHQALIFKYLKAGLSVPPELLVPIRKSLQLMSHPSLGYYGKKIDPEPGRCRRTDGKKWRCSRDAHPDSKYCDRHMIRRRYRSRKPVESQSQSSSSSSSSSSSSQLGATTGSTTTVSASATATATFNTLPLHTNGTREGFSFTLGNSLPNFQMDPMSLPSQGCKKPYRFGLNSEADEHNILQKDLGSVKYQGYDFTSDGMWSQIPSNTVSESRSGSMVGNCFQQRTMRDAELLNLDTARSKELVFSGQSCSGGFLKQEYQSPQSLFSDWHWKKDLGSSAIEYRPNKDFNVNPDVNVDSNGSL* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01316 327 MobiDBLite consensus disorder prediction 112 136 - -
Rops1g01316 327 Pfam WRC 71 113 IPR014977 -
Rops1g01316 327 ProSiteProfiles WRC domain profile. 70 114 IPR014977 -
Rops1g01316 327 PANTHER GROWTH-REGULATING FACTOR 5 16 284 IPR031137 GO:0005634|GO:0006351|GO:0032502
Rops1g01316 327 MobiDBLite consensus disorder prediction 70 136 - -
Rops1g01316 327 SMART QLQ_2 16 52 IPR014978 GO:0005524|GO:0005634|GO:0006355
Rops1g01316 327 Pfam QLQ 17 51 IPR014978 GO:0005524|GO:0005634|GO:0006355
Rops1g01316 327 ProSiteProfiles QLQ domain profile. 17 52 IPR014978 GO:0005524|GO:0005634|GO:0006355
Rops1g01316 327 MobiDBLite consensus disorder prediction 70 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01316 Rops-Chr1 29618327 29621540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01316 12 113 GRF Transcription Factor Family AT3G13960 58.772 7.84e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Rops1g01316 WRC 2.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01316 - - gmx:100809947 474.552