Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01304 ATGGAGAGTGGTGGAAGAAGAGAAGGTTATGATGGGGTGGTGATGACGATGACCAGAGACCCGAAGCCGAGATTGAGGTGGACAGCTGATCTTCATGACCGATTTGTGGATGCTGTCACAAAGCTTGGTGGTCCTGATAAGGCAACTCCCAAGTCTGTTCTGAGGTTAATGGGCTTGAAAGGTTTGACATTATATCATTTGAAGAGCCATTTGCAGAAGTATAGACTTGGACAGCAGGCTAGAAAACAAAATGACGAACACCACAAAGAGAATAATAGATGTTCATATGTAAATTTCAGTAATCGTTCTTCAGGGCCTAATACTATTTACAGAAGTGATAATGACACGGGAGAAATCCCAATAGCAGAAGCATTAAGGCATCAGATTGAAGTTCAAAAAAGATTGGAAGAGCAGCTTGAGGTACAGAAGAAATTGCAAATGAGAATAGAGGCACAAGGGAAGTATTTGCAAGCCGTGTTAGAGAAAGCCCAAAGGAGCCTTTCCCTGGATGGACCAAATAGTGTTGAAGCTTCAAGAGCTCAATTAACTGAATTCAACTCTGCTTTGTCAAATGTCATGGATAATATGAACAAAGATAGCAAAGAAAACATAATAAACGTTAATGATTTTTATAGTAAGAGCCATAGCCCAGCTTTCCATTATCAAGAAGTAGGGAGAGAAGAAAATAAGGATCAAAAGCCTAAGATTGAAGGGGGTTCAATACAGTTTGATTTAAACATCAAAGGTAGCAATGACCTTGTATCTGCAGATGGAGCTGAAAGGGAATCCAAGATGGTTTCCTATAGGATACACAATTGTTGA 822 0.399 MESGGRREGYDGVVMTMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQARKQNDEHHKENNRCSYVNFSNRSSGPNTIYRSDNDTGEIPIAEALRHQIEVQKRLEEQLEVQKKLQMRIEAQGKYLQAVLEKAQRSLSLDGPNSVEASRAQLTEFNSALSNVMDNMNKDSKENIINVNDFYSKSHSPAFHYQEVGREENKDQKPKIEGGSIQFDLNIKGSNDLVSADGAERESKMVSYRIHNC* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01304 273 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 77 IPR006447 GO:0003677
Rops1g01304 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 79 IPR017930 -
Rops1g01304 273 Pfam Myb-like DNA-binding domain 25 75 IPR001005 -
Rops1g01304 273 FunFam Myb family transcription factor 21 79 - -
Rops1g01304 273 Pfam MYB-CC type transfactor, LHEQLE motif 120 165 IPR025756 -
Rops1g01304 273 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 13 220 IPR044848 GO:0003700
Rops1g01304 273 SUPERFAMILY Homeodomain-like 22 79 IPR009057 -
Rops1g01304 273 Gene3D - 21 79 - -
Rops1g01304 273 Coils Coil 122 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01304 Rops-Chr1 29437394 29440113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01304 13 191 G2-like Transcription Factor Family AT3G24120 51.892 1.06e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops1g01304 Myb_DNA-binding 2.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01304 - - gmx:100810146 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01304 1 29437394 29440113 Rops1g01304 1 29437394 29440113 ECH