Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01300 ATGGCTGCAAATGTAAACTGTGACATGCCCCAAAACACAAGCACCAACACCCTCACTCACCCTCCTCATTGGTACTCACCAAAAACTGGAATTTACTATAGCAAACACGGTTCCTTGGAGCTTCCCGCTGACCCTTTTTTTGACCTTGTTTCCTTCATTTTTTCTCACCGCCATAATGGGGTTTTAGCCCTTGTTGATTCCTCATCTGGGTGTTCCATTTCTTACTCAAAGTTGTTACCTTTGGTCCAATCCATGGCTTCTGGTCTCCACAAAATGGGTGTTTCACAAGGTGATGTGGTTTTGCTTCTACTTCCAAATTCCATTTACTATCCCATTGTGTTCTTGGGGGTTCTGTATCTTGGTGCTGTTGTTGCACCATTGAATCCTCTTAGTAGTATCTATGAAATAAGAAAACAGATTAAGGAGTGTGGTGTGAGTTTGGCTTTTACTATACCTGAAAATTTCAAGAAACTAGAACCATTTGGAATTCCCATTATTGCTGTGCCAGAAAATGAGGAGGGTTTAAGGCATGGTTGTTTTTCAGGTTTTTGTAACCTGATTTCTGGCAATTTTGATTTGCCTCAAAGGCCAATTGTTAAACAGGAAGATACTGCTGGTATATTGTATTCTTCAGGGACTACAGGGGTGAGCAAAGGAGTTGTTCTAACTCATAAAAATCTCATTGCTATGGTTGAGCTTTTTGTGAGGTTTGAAGCTTCTCAATATGACTACTCTTGCTTGAAGAATGTGTTTCTTGCTGTTTTGCCAATGTTCCATATATATGGTTTATCACTCTTTGCTATGGGATTACTGTCTCTGGGTTCTACAGTCATTGTAATGAGGAAATTTGACATTGATGAGGTTATCAATGTGATTGATAAATACAAAGTTACACACTTTCCTGTTGTTCCCCCAATGTTGACAGCATTGACAATTAGAGGAAAGGGTATTAATGGAAGTAAGTTGCAGAGTTTGATACAAGTCTCCAGTGGTGCAGCACCTTTGAGCACCGGAGTTATTAAAGACTTTGTCCAAACTTTCCCTAATGTTGATTTTATACAGGGTTATGGAATGACTGAATCAACTGCAGTAGGAACACGTGGCTTCAATACTGAAAAGTTTCGCAACTATTCTTCAATAGGGTTGTTAGCTCCAAACATGGAGGCAAAAGTGGTAGACTGGAATAGTGGTGCATTTTTTCCCCCAGGCAGCAGTGGTGAGCTTTGGTTGAGAGGGCCTGGAATTATGAGAGGATACTTGAATAATGAGGAAGCCACAATGTCAACAATTGATAAAGATGGTTGGCTACATACTGGTGATGTTGTATATTTTGATCAGGATGGGTATTTACATTTATCTGACCGCTTGAAAGATATTATCAAATACAAGGGCTTTCAGATTGCTCCTGCTGATTTAGAAGCTGTGTTAGTTTTGCATCCTGAAGTAGTTGATGCTGCTGTTACAGGTGCCATGGATGAAGAAACTGGGGAGATACCAGTGGCTTTTGTGGTCAAGAAGGTTGGAAGTGTACTTTCTCCAAAGCATATTATGGATTATGTTGCTGGACAGGTTGCTCCATACAAGAAGGTTAGGAAAGTGGTGTTCACTGACAAGATACCAAGGTCTGCCACTGGGAAGATCCTTCGCAAGCAACTGAGGAATTGCTTGACTTCTAAACTCTAA 1683 0.4052 MAANVNCDMPQNTSTNTLTHPPHWYSPKTGIYYSKHGSLELPADPFFDLVSFIFSHRHNGVLALVDSSSGCSISYSKLLPLVQSMASGLHKMGVSQGDVVLLLLPNSIYYPIVFLGVLYLGAVVAPLNPLSSIYEIRKQIKECGVSLAFTIPENFKKLEPFGIPIIAVPENEEGLRHGCFSGFCNLISGNFDLPQRPIVKQEDTAGILYSSGTTGVSKGVVLTHKNLIAMVELFVRFEASQYDYSCLKNVFLAVLPMFHIYGLSLFAMGLLSLGSTVIVMRKFDIDEVINVIDKYKVTHFPVVPPMLTALTIRGKGINGSKLQSLIQVSSGAAPLSTGVIKDFVQTFPNVDFIQGYGMTESTAVGTRGFNTEKFRNYSSIGLLAPNMEAKVVDWNSGAFFPPGSSGELWLRGPGIMRGYLNNEEATMSTIDKDGWLHTGDVVYFDQDGYLHLSDRLKDIIKYKGFQIAPADLEAVLVLHPEVVDAAVTGAMDEETGEIPVAFVVKKVGSVLSPKHIMDYVAGQVAPYKKVRKVVFTDKIPRSATGKILRKQLRNCLTSKL* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01300 560 FunFam 4-coumarate--CoA ligase 2 458 559 - -
Rops1g01300 560 Pfam AMP-binding enzyme 57 462 IPR000873 -
Rops1g01300 560 ProSitePatterns Putative AMP-binding domain signature. 207 218 IPR020845 -
Rops1g01300 560 CDD 4CL 41 552 - -
Rops1g01300 560 Pfam AMP-binding enzyme C-terminal domain 472 546 IPR025110 -
Rops1g01300 560 Gene3D - 31 457 IPR042099 -
Rops1g01300 560 Gene3D - 458 558 IPR045851 -
Rops1g01300 560 FunFam Long-chain-fatty-acid--CoA ligase FadD 36 457 - -
Rops1g01300 560 SUPERFAMILY Acetyl-CoA synthetase-like 56 557 - -
Rops1g01300 560 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 26 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01300 Rops-Chr1 29403875 29405264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01300 3 560 Monolignol Biosynthesis Gene Families AT4G19010 59.964 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01300 K01904 - gmx:100804808 954.896