LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops1g01295	ATGGGTCGCAAACACGACGCCGTTTTGGTCAGCGAACCAGTCGCCATCAGCCCCGAGCTCGAATCCGAGAAGAAGAAGAAGAAGAAGAAGAAGAACAAAGACAAGCTTCAAAATGAAGAAAACAGCCCCAAAAGAAAGCTCGACGAACTCGAACTTCAAAACGACACCGCATCAGAGAAGAAAAAGAAGAAGAAGGAGGAGAAGCATCACAAGTCAAAAGAGGACACTGACGGCGATGAAACGGTCAGGGACGAACAGGTGATGGTTACAGGGAAGAATGCCGGAGACGCGAAATACGCGGCGGTTAAAACGTTCTGGGATTCGGGATTGCCGAAGAATGTTCTGGAATGTTGCAAGGGTTTCGAGAAACCTTCTCCGATTCAATCACGAGCGTGGCCTTTCTTGTTGGACGGTCGTGATCTTATTGGAATTGCAGCAACTGGTTCAGGGAAGACACTTGCATTTGGATTACCGGCGGTTATGCATGTTTTGAGAAAGCGAAAGAGTAAAGTTTCTTCCAAGGGAAGGAATCCTCTTTGCCTCGTGCTTTCTCCCACTAGGGAGCTAGCTCAACAAATATCAGATGTCATCTGTGATGCTGGTAGGTCTTGTGGTGTGGATTCAATTTGTTTGTATGGTGGAACCTCCAAAGGGCCCCAAATCTCAGCACTAAAATCTGGAACTGACATTGTCATTGGAACCCCTGGTCGTATCCAGGATCTGATTGAAATGGGCATCTGTTGTCTAAAAGAAGTATCATTTGCGGTTCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAGTAGTTCGCTCTATACTGGGTCAGACATGTTCTGCTCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTACCAGTTCATCACTTAGCACAGGAGTTTATGGATCCTAACCCTGTAAAAGTTGTTGTAGGCTCAGAGGATTTAGCTGCTAATCATGATGTCATGCAGATAGTTGAGGTCTTGGATGACTGTTCACGTGATAAGCGCCTGGTTTCTTTACTGGAAAAATACCACAAATCTCAGAAGAATCGAGTATTGGTTTTTGTTTTGTACAAATGGGAGGCCTCACGAGTTGAAAATATGCTTCAACAAGGGGGTTGGAAGGCTGTGTCAATACATGGGGACAAAGCACAACATGCTCGCACAAAGGCACTATCATTATTCAAGAATGGAAGCTGTCCTTTGATGGTTGCTACTGATGTGGCAGCACGAGGATTGGATATTCCAGATGTTGAAGTAGTGATCAACTATAGTTTTCCTCTAACTACAGAAGATTATGTTCATAGAATTGGGAGGACTGGACGAGCTGGTAAAAAAGGTGTTGCCCATACATTCTTCATGCAGCAGAATAAGGGACTTGCTGGGGAGCTTGTGAATGTTTTAAGAGAAGCAGGACAAATTGTGCCAGATTCTCTCTTGAAATTTGGCACACATATAAAGAAAAAGGAGTCCAAGCTTTATGGGGCGCACTTCAAGGAAATTCCTGTTGATGCTCCAAAGTCTCAAAAAATAACATTTGGCGACTCTGACGATGAAGACTAA	1572	0.444	MGRKHDAVLVSEPVAISPELESEKKKKKKKKNKDKLQNEENSPKRKLDELELQNDTASEKKKKKKEEKHHKSKEDTDGDETVRDEQVMVTGKNAGDAKYAAVKTFWDSGLPKNVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGLPAVMHVLRKRKSKVSSKGRNPLCLVLSPTRELAQQISDVICDAGRSCGVDSICLYGGTSKGPQISALKSGTDIVIGTPGRIQDLIEMGICCLKEVSFAVLDEADRMLDMGFEQVVRSILGQTCSARQMVMFSATWPLPVHHLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDCSRDKRLVSLLEKYHKSQKNRVLVFVLYKWEASRVENMLQQGGWKAVSIHGDKAQHARTKALSLFKNGSCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFMQQNKGLAGELVNVLREAGQIVPDSLLKFGTHIKKKESKLYGAHFKEIPVDAPKSQKITFGDSDDED*	524

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops1g01295	523	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	59	482	-	-
	Rops1g01295	523	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	256	264	IPR000629	-
	Rops1g01295	523	MobiDBLite	consensus disorder prediction	1	84	-	-
	Rops1g01295	523	CDD	SF2_C_DEAD	324	456	-	-
	Rops1g01295	523	CDD	DEADc	119	311	-	-
	Rops1g01295	523	SMART	ultradead3	120	327	IPR014001	-
	Rops1g01295	523	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	177	460	IPR027417	-
	Rops1g01295	523	FunFam	ATP-dependent RNA helicase RhlB	313	490	-	-
	Rops1g01295	523	Pfam	Helicase conserved C-terminal domain	339	447	IPR001650	-
	Rops1g01295	523	MobiDBLite	consensus disorder prediction	69	84	-	-
	Rops1g01295	523	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	132	310	IPR014001	-
	Rops1g01295	523	SMART	helicmild6	366	447	IPR001650	-
	Rops1g01295	523	Gene3D	-	53	313	IPR027417	-
	Rops1g01295	523	Gene3D	-	314	488	IPR027417	-
	Rops1g01295	523	Coils	Coil	19	67	-	-
	Rops1g01295	523	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	339	486	IPR001650	-
	Rops1g01295	523	MobiDBLite	consensus disorder prediction	33	62	-	-
	Rops1g01295	523	Pfam	DEAD/DEAH box helicase	126	294	IPR011545	GO:0003676\|GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops1g01295	Rops-Chr1	29346464	29351423	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops1g01295	102	455	Eukaryotic Initiation Factors Gene Family	AT3G19760	33.146	1.51e-54	187

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops1g01295	K14811		-	gmx:100305353	858.596