Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01279 ATGGATAAAACTCCAAAAGAAAAGGATTCGAAAACACCGCCACCTACTTCACAGGAGCAGTCTTCGACCACCAGCACTGGAACAATTAATCCTGACTGGTCCAGCTTTCAGGCATATTCTCCGATACCTCCACATGGGTTTTTGGCATCAAGTCCCCAAGCTCACCCTTATATGTGGGGTGTCCAGCATATTATGCCTCCCTATGGTACTCCACCACATCCGTATGTTGCAATGTATCCCCATGGTGGCATATATGCTCATCCATCCATACCTCCGGGGTCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCAAACGGTATTGCTGAGACTTCAGGAAATACTCCTGGCAGCATGGAAGCTGATGCTAAGCCTCCTGAGGTGAAGGAAAAATTGCCAATCAAAAGATCAAAAGGAAGTTTGGGTAGCTTGAATATGATTACCGGGAAAAATAATGAACATGGTAAAACGCCAGGGACATCTGCCAATGGAATTCAGTCAAAGAGTGGTGAGAGTGCAAGTGAAGGTACTAGTGAAGGAAGTGATGCAAATTCTCAGAATGACTCTCAATTGAAATCAAGCAGCAGGCGGGATTCTTTTGAAGATGAACCATCTCAAAATGGAAGTTCAGTGCATACTCCTCAAAATGGGGGACTAAATACGCCTCATACAGTGGTCAATCAAACCATGTCTATCATTCCTATCCCCGCAGGTGGTGCTCCTGGAGCTGTTCCTGGTCCCACAACAAACTTAAATATAGGAATGGATTATTGGGGTGCACCAACTTCTTCCAACATTCCTGCGCTGCGTGGAAAGGTTCCGTCTACTACAGTTGCAGCAGGGATAGTTACTACTGGATCACGGGATAGTGTTCAGTCACAACTTTGGCTACAGGATGAAAGAGAGCTTAAAAGACAAAGACGGAAGCAGTCTAACAGGGAATCTGCTCGTAGATCCAGGTTGCGCAAACAGGCTGAGTGTGATGAGTTAGGTCAGCGTGCTGAGGCTTTGAAAGAAGAAAATGCTTCCCTCCGATCGGAAGTAAGTCGTATCAGGAGTGAGTATGAACAACTACTCTCCGAGAATGCAGCTCTCAAGGAGAGACTTGGCGAACTACCTGGCAATGATGATCTTAGGTCTGGCAGGAATGATCAGCATGTGGGTAATGACACTCAACAAAGTGGGCAGACAGAGGCTGTGCAGGGTGGTCATTAG 1215 0.4634 MDKTPKEKDSKTPPPTSQEQSSTTSTGTINPDWSSFQAYSPIPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPHGGIYAHPSIPPGSYPFSPFAMPSPNGIAETSGNTPGSMEADAKPPEVKEKLPIKRSKGSLGSLNMITGKNNEHGKTPGTSANGIQSKSGESASEGTSEGSDANSQNDSQLKSSSRRDSFEDEPSQNGSSVHTPQNGGLNTPHTVVNQTMSIIPIPAGGAPGAVPGPTTNLNIGMDYWGAPTSSNIPALRGKVPSTTVAAGIVTTGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELGQRAEALKEENASLRSEVSRIRSEYEQLLSENAALKERLGELPGNDDLRSGRNDQHVGNDTQQSGQTEAVQGGH* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01279 404 MobiDBLite consensus disorder prediction 1 37 - -
Rops1g01279 404 MobiDBLite consensus disorder prediction 366 404 - -
Rops1g01279 404 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 307 322 IPR004827 GO:0003700|GO:0006355
Rops1g01279 404 Pfam G-box binding protein MFMR 4 91 IPR012900 -
Rops1g01279 404 MobiDBLite consensus disorder prediction 106 223 - -
Rops1g01279 404 PANTHER G-BOX-BINDING FACTOR 3-RELATED 13 394 IPR044827 GO:0003700|GO:0006355|GO:0043565
Rops1g01279 404 SMART brlzneu 300 364 IPR004827 GO:0003700|GO:0006355
Rops1g01279 404 Coils Coil 320 368 - -
Rops1g01279 404 Gene3D - 303 357 - -
Rops1g01279 404 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 302 365 IPR004827 GO:0003700|GO:0006355
Rops1g01279 404 MobiDBLite consensus disorder prediction 303 323 - -
Rops1g01279 404 MobiDBLite consensus disorder prediction 204 223 - -
Rops1g01279 404 MobiDBLite consensus disorder prediction 385 404 - -
Rops1g01279 404 Pfam bZIP transcription factor 300 362 IPR004827 GO:0003700|GO:0006355
Rops1g01279 404 MobiDBLite consensus disorder prediction 14 37 - -
Rops1g01279 404 MobiDBLite consensus disorder prediction 370 384 - -
Rops1g01279 404 MobiDBLite consensus disorder prediction 141 193 - -
Rops1g01279 404 Pfam Disordered region downstream of MFMR 130 267 - -
Rops1g01279 404 SUPERFAMILY Leucine zipper domain 303 359 IPR046347 GO:0003700|GO:0006355
Rops1g01279 404 CDD bZIP_plant_GBF1 305 355 IPR045314 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01279 Rops-Chr1 29184738 29193839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01279 1 398 bZIP Transcription Factor Family AT2G35530 63.547 8.12e-169 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops1g01279 MFMR_assoc 3.9e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01279 K09060 - gmx:778122 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01279 1 29184738 29193839 Rops1g01279 1 29184738 29193839 ECH