Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01278 ATGGCAACAACAACAACAACAACAGAGGGAGAAGAAGAACAAGAACGAGAAGCTTCGCGTCTCAAGGCTCTTGCAGAGTCCAAGTTCTCAATTTTCAACGACCCCAAATCAGCTCTCAAATACGCAAAACGAGCCCAACGTCTATGCCCTGAACTTGAAGGCATATCAGAAACAGTAACCTCACTCTCCATCCTCTGTGCCCCCGATTATTACAGAGTCATCGGCGTCGAACCCTTCTCCGACACCAACAACATTAAGAAACACTACAAGAACCTCGCTTTACTCCTTCACCCCGACAAGAACCGCCACGTGGCATCCGAGGAAGCCTTCAAGCTTGTCGGCGAAGCCTTTCGCATTCTCTCCGACAGGTCAAAGAAGAAGGACTATGATGCCAACCTTAGAAATGGAACTTTCTGGACGGCGTGTTCAACTTGCAGGTTGTTGCATCAGTTTGAGAGAAGGTACGTGGGTCAGAATCTGGTGTGTCCTAGTTGTAACAAGAGTTTTAAGGCTTTTGAAACTGTTCAGGATGATGAAGAGAGAGAGACGTTGGGTGAGTTTGTTTTGAGGAAGAAAAAGAAGATGGGTGGGGTTGAAAGGGTGAAAGGGGAAGTGGGTAGTGAAAAAGGTGGGAACTTGAAGGGTAATGTTGAGGATGGTGAAGTGGGTGGTGGTGGAAGATTGAGAAGTGGGGGTTTGAGGAAGAGTATGCGTATTGGGGAGGTTTTGGAAAGGTCAAAACCAGAAAGGATTAGAACTGGTGAGGAAATGATGACATTGGCTGAATTTCAGTCTCAAGTTAAGAAGAAGAAGATGAAGGATAAGGAGGAGGTGGAAGAGGAGGAGGAGGGAAGAACAGAGAAAAGGAGCAAGAAAGGGGAGAGATTGGAAGATAAGAGGGGTTTAGAGGTTGAGGAAGTGAGGAGGAGTTTGAGAAAGAGTGTGAAGCCAACAATCAAGGAGAAGCACGAGGATTCTACGAAGAGAAAGGGGTTCAGACCTGAGAAGAAGCATAGGGATTCTAGTGGAAGGGAATTGGAAGTTATGGCAGTGGTGGATGCTGATTTTTATGATTTTGACAAAGATAGAACGGAGAGAAGCTTTAAGAAAGGCCAAGTTTGGGCTGTATATGACGATGATGATGGAATGCCAAGGCATTATGCATTGATTGATGAAGTTGTTTCAGCAAATCCTTTTGAAGTGAGGATAAGTTGGTTGGATTTACAGAACAATGGGGATGGAAAGATAGTTAGTAGGGAGAAAATGGGGTTTCATATACCTTGTGGGAGATTTAAAGTTGCCAGGAAGGATTCCATAAACTCAGTAAATATCTTTTCTCATGTTGTGGATTGTGACCGGGCAGCACGTGAGGGTTACAAAATTTATCCAAAGAAGGGCTCAGTGTGGGCGCTTTATGGTGATGCAATCCTTGATGCAGATGGAAGAAGACATTTTGCAGATGAAGGCAAGAGATGCTATGACATTGTTGTGTTTTTGACAAGTTACAGTGAGATTAATGGTCTCAGCATGGCATATCTTGAGAAGGTTGATGGTTACAAGACAGTATTTAAGAGACAAGAGATGGGGAGTCATGCCATTAGATTTCTAGGAAAGGATGACATCTGGTTAATTTCTCATCAGATTCCTGCGCGGAAATTTCCTTGTAACGAGACTCCTGAACTGTTGAAGGACTGTTGGGAACTTGATCCTGCTTCACTTCCTTCAGATTTACTTACAATTGGTGGCATAGATAATTGA 1758 0.4403 MATTTTTTEGEEEQEREASRLKALAESKFSIFNDPKSALKYAKRAQRLCPELEGISETVTSLSILCAPDYYRVIGVEPFSDTNNIKKHYKNLALLLHPDKNRHVASEEAFKLVGEAFRILSDRSKKKDYDANLRNGTFWTACSTCRLLHQFERRYVGQNLVCPSCNKSFKAFETVQDDEERETLGEFVLRKKKKMGGVERVKGEVGSEKGGNLKGNVEDGEVGGGGRLRSGGLRKSMRIGEVLERSKPERIRTGEEMMTLAEFQSQVKKKKMKDKEEVEEEEEGRTEKRSKKGERLEDKRGLEVEEVRRSLRKSVKPTIKEKHEDSTKRKGFRPEKKHRDSSGRELEVMAVVDADFYDFDKDRTERSFKKGQVWAVYDDDDGMPRHYALIDEVVSANPFEVRISWLDLQNNGDGKIVSREKMGFHIPCGRFKVARKDSINSVNIFSHVVDCDRAAREGYKIYPKKGSVWALYGDAILDADGRRHFADEGKRCYDIVVFLTSYSEINGLSMAYLEKVDGYKTVFKRQEMGSHAIRFLGKDDIWLISHQIPARKFPCNETPELLKDCWELDPASLPSDLLTIGGIDN* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01278 585 Gene3D DnaJ domain 67 160 IPR036869 -
Rops1g01278 585 PRINTS DnaJ domain signature 89 104 IPR001623 -
Rops1g01278 585 PRINTS DnaJ domain signature 105 125 IPR001623 -
Rops1g01278 585 PRINTS DnaJ domain signature 71 89 IPR001623 -
Rops1g01278 585 ProSiteProfiles dnaJ domain profile. 69 133 IPR001623 -
Rops1g01278 585 CDD DnaJ 69 122 IPR001623 -
Rops1g01278 585 MobiDBLite consensus disorder prediction 260 344 - -
Rops1g01278 585 MobiDBLite consensus disorder prediction 266 344 - -
Rops1g01278 585 PANTHER BNAC03G44070D PROTEIN 13 574 - -
Rops1g01278 585 MobiDBLite consensus disorder prediction 204 232 - -
Rops1g01278 585 SMART dnaj_3 68 125 IPR001623 -
Rops1g01278 585 Pfam DnaJ domain 69 130 IPR001623 -
Rops1g01278 585 Pfam Domain of unknown function (DUF3444) 348 553 IPR024593 -
Rops1g01278 585 SUPERFAMILY Chaperone J-domain 64 135 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01278 Rops-Chr1 29174841 29176598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01278 17 176 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.122 8.32e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01278 - - lja:Lj2g3v1510610.1 755.362