Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01270 ATGTATGGGGATTGCCAAGTTATGTCAAGTTTGGGAGGGAACGTAGTAGTAAACTCAGATACCCTCTTCTCTTCTTCGATCCAGAACTCTAACTTCAACTTCATGCCCACCATGCCTTTTCAACCTTTTCCTCCCATGAAAGAAGAAGATGGGATCTTGCGAGGGAAAGAAGAGATGGAGAGTGGTTCTGGTAGTGAACAAGTTGAAGACAAGAGTGGGAATGAGCAAGAGATCACTGAACAACAACCCACAAAGAAGAAACGTTATCATAGGCACACTGCACGCCAGATCCAAGAGATGGAAGCGTTGTTCAAGGAATGTCCACACCCAGATGACAAGCAAAGGTTGAAACTGAGCCATGAACTTGGCCTGAAACCACGCCAGGTCAAGTTCTGGTTTCAGAACCGAAGAACCCAGATGAAGGCACAACAAGATCGAACAGATAATGTGATACTTAGAGCAGAGAATGAGACTCTAAAGAATGAGAACTATCGGCTACAAACAGCGCTACGTAATATTATATGTCCCAATTGTGGTGGCCCGTGTATAATGGGTGCTGATCTGGGCCTGGATGAACAGCAACTTCGTCTTGAAAATGCCCGCTTAAGAGAAGAGTTAGAACGTGTGTGTTGTCTCACTTCAAGATACACTGGCCGTCCAATCCAAACAATGGCAACACCTCCTACTCTTATGGCACCTTCATTGGATTTGGACATGAACATATACCCAAGGCACTTTGGGGACCCTATTCCTCCTTGCACAGAAATGATTCCTGTGCCCATGTTGCCTCCTGAAGCTTCATCATTTCAAGAGGGTGGTCTCTTAATGGATGAGGACAAGTCTATGGCCTTGGAGCTTGCGGCATCTTCCATGGCTGAGCTTGTGAAGATGTGCCACACAAATGAGCCACTTTGGATCCGAAGCAGTGAGAGTGAAAGGGAGGTGCTTAATTTTGAAGAGCACGCAAGGATGTTTCCATGGCCTTTGAATCTCAAGCACCGAAGTGAACTAAGGACAGAAGCTAGCCGTGACACTGCTGTGGTTATAATGAATACTGTCACTCTTGTTGATGCTTTCCTTGATGCTCAAAAATGGATGGAATTGTTTCCTACAATAGTTTCTAGAGCAAAAACTCTCCAAATTATATCTTCTGGTGCTTCTGGTCATGCAAGTGGGACTCTTCAGCTGATGTATGCAGAATTTCAAGTTCTTTCTCCTTTGGTGTCCACTCGTGAGACTCATTTTCTTCGGTATTGTCAGCAAAATGCTGAGGAGGGAACTTGGGCCATTGTTGATTTTCCTGTTGATAGCTTTCACCAAAATTTTCACCCTTCTTATCCCAGATACTGCAGGAGGTCCTCTGGCTGTGTGATTCAAGATATGCCAAATGGGTACTCAAGGGTAACATGGGTTGAGCATGCAAAAGTAGAAGAGAAACCTGTCCATCAGATATTCTGTCACTACGTGTATAGTGGAATGGCATTTGGAGCACAACGCTGGTTAGGAGTTTTGCAAAGACAATGTGAGAGGGTCGCAAGCCTCATGGCCAGAAACATATCAGATCTTGGAGTGATACCTTCGCCAGAAGCACGAAAGAACTTAATGAAACTAGCCCAAAGAATGATAAAAACATTTAGCCTTAACATGAGCACCTCAGGGGGTCAATCATGGACGGCCATATCAGATAACCCTGAAGACACTGTTAGAATCACAACTAGGAAAATCACAGAGCCTGGCCAACCTAATGGGGTGATTCTTGCTGCTGTTTCATCCACTTGGTTACCTTATTCTCATGACAAGGTCTTTGATCTTCTCAGGGACGAAGGCCACAGATCTCAGTTGGATGCTCTTTCCAATGGGAACTCATTAAATGAAGTGGCTCACATTGCAAATGGCTCACTTCCAGGAAACTGCATTTCCCTTCTTCGCATAAATGTAGCAAGCAACTCATCCCAGAATGTAGAGCTGATGCTACAAGAGAGTTGCACTGATCAATCTGGAAGCTTAGTTATCTACTCCACTATCGATGTGGATTCCATTCAGCTAGCCATGAGTGGTGAGGACCCCTCCTGCATTGCCCTTCTTCCACAAGGGTTCATGATAGTGCCAATGGTATCATCCAATAATGACATTGCCATCGATGGCAATTCATCTGAAGCTGTCACAGGACCACAATCTTCTACTACTAGTGCCAATTCAGGTTGTCTTCTGATCATGGGGCTTCAAGTTCTTGCAAGCACAATCCCTACTGCAAAGCTCAACCTTTCTAGTGTGACAGCAATCAATAACCACCTCTGCAACACAATGCACCAAATTGAAGCTGCTCTTTGTAGCACTAACCTTGTTGGGTCTTGCACTGAACCCACCACCAGTGCACCCCCCAAGTAG 2388 0.4506 MYGDCQVMSSLGGNVVVNSDTLFSSSIQNSNFNFMPTMPFQPFPPMKEEDGILRGKEEMESGSGSEQVEDKSGNEQEITEQQPTKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMKAQQDRTDNVILRAENETLKNENYRLQTALRNIICPNCGGPCIMGADLGLDEQQLRLENARLREELERVCCLTSRYTGRPIQTMATPPTLMAPSLDLDMNIYPRHFGDPIPPCTEMIPVPMLPPEASSFQEGGLLMDEDKSMALELAASSMAELVKMCHTNEPLWIRSSESEREVLNFEEHARMFPWPLNLKHRSELRTEASRDTAVVIMNTVTLVDAFLDAQKWMELFPTIVSRAKTLQIISSGASGHASGTLQLMYAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVDSFHQNFHPSYPRYCRRSSGCVIQDMPNGYSRVTWVEHAKVEEKPVHQIFCHYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLAQRMIKTFSLNMSTSGGQSWTAISDNPEDTVRITTRKITEPGQPNGVILAAVSSTWLPYSHDKVFDLLRDEGHRSQLDALSNGNSLNEVAHIANGSLPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLVIYSTIDVDSIQLAMSGEDPSCIALLPQGFMIVPMVSSNNDIAIDGNSSEAVTGPQSSTTSANSGCLLIMGLQVLASTIPTAKLNLSSVTAINNHLCNTMHQIEAALCSTNLVGSCTEPTTSAPPK* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01270 795 SUPERFAMILY Bet v1-like 528 773 - -
Rops1g01270 795 CDD START_ArGLABRA2_like 280 509 - -
Rops1g01270 795 MobiDBLite consensus disorder prediction 57 93 - -
Rops1g01270 795 Pfam START domain 286 510 IPR002913 GO:0008289
Rops1g01270 795 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981|GO:0006355
Rops1g01270 795 Gene3D - 70 154 - -
Rops1g01270 795 SMART START_1 285 510 IPR002913 GO:0008289
Rops1g01270 795 FunFam Homeobox-leucine zipper protein HDG1 72 159 - -
Rops1g01270 795 ProSiteProfiles 'Homeobox' domain profile. 83 143 IPR001356 GO:0003677
Rops1g01270 795 Pfam Homeodomain 86 141 IPR001356 GO:0003677
Rops1g01270 795 Gene3D - 291 485 IPR023393 -
Rops1g01270 795 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 82 776 IPR042160 -
Rops1g01270 795 CDD homeodomain 86 144 IPR001356 GO:0003677
Rops1g01270 795 SUPERFAMILY Homeodomain-like 76 144 IPR009057 -
Rops1g01270 795 SMART HOX_1 84 147 IPR001356 GO:0003677
Rops1g01270 795 SUPERFAMILY Bet v1-like 277 512 - -
Rops1g01270 795 MobiDBLite consensus disorder prediction 57 84 - -
Rops1g01270 795 ProSiteProfiles START domain profile. 276 513 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01270 Rops-Chr1 29039440 29044722 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01270 8 779 Homeobox Transcription Factor Family AT5G46880 56.220 0.0 862
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops1g01270 START 1.2e-40 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01270 - - gmx:100812829 1361.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01270 1 29039440 29044722 Rops1g01270 1 29039440 29044722 ECH
Rops1g01270 1 29039440 29044722 Rops6g02778 6 49904147 49910372 ECH