Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01268 ATGGTGGAAAGAAGAATGTGTTTATCTAAGGAAGCAAGAAATGGGTTAGAATATTTGAAGCGTAAAAGGCTTCAGCGTGCAAAATCTATCACTGACACCCGGACAAGTATTGCTAACATGATGAACCGAAGTGGAGGAGATGCTTTAAGAGCTTCGGCATCATGTGACGTTAGATTGCATGGTAATGTAGATGCCTTTTCCAAGCGGAAGGTGGATAAGTTTGACACAAATGATCTGGAATGGACTGATAAAATTCCTGAGTGTCCTGTATATTCTCCAACAAAAGAAGAATTTGAGGATCCTTTGATTTATTTGCAAAAGATAGCTCCAGAAGCTTCTAAATATGGAATCTGCAAGATTATTTCACCTTTGAATGCTTCTGTACCTGCTGGGGTTGTTTTAATGAAGGAGAAAGCAGGATTCAAGTTTACAACTAGAGTGCAGCCACTTCGCCTTGCTGAATGGGATACTGAAGACAAAGTCACGTTTTTCTTGAGTGGAAGAAATTATACATTTCATGATTATGAGAAAATGGCGAACAAGGTTTTTGCACGAAGGTATTGTAGTGCTGGATGTCTTCCTGCCACATACTTGGAAAAAGAGTTTTGGCAAGAAATTGGTTGTGGGAAAATGGAAACTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCTTCTCCCACTGATCAGCTTGGAAACAGCAAATGGAATTTGAAGAAACTTTCACGATTGCCCAAATCAATTTTGCGGCTCTTGGAAACATCAATTCCGGGAGTAACGGAACCCATGCTATACATCGGAATGCTGTTTAGTATGTTTGCTTGGCATGTGGAGGATCATTATTTGTACAGCATTAATTATCATCACTGCGGGGCATCAAAAACATGGTATGGTATTCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACATGTGTACACTACTGATATTTTGTCAAGTGATGGTGAAGATGGAGCCTTTGATGTTCTCCTGGGGAAAACAACACTGTTTCCACCGAATATTTTGTTGGAGCATAAAGTCCCTGTCTACAAGGCTGTTCAAAAGCCAGGGGAGTTTATAATAACCTTTCCCAGAGCATATCATGCTGGCTTCAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCGCTAGGGGCTATTGCTAGCCGGAGATATGCGCTTCTTAACAGGGTTCCTTTGTTGCCTCATGAAGAACTTCTTTGCAAAGAAGCAATGCTTCTTCATACATGCTTGGAACTTGAAGATTCAGACCTTCTCTCTTCAGACTTGTTTTCTCATAATAGCATTAAGATTTCTTTTGTTAATTTGATGCGTTTCCAGCATTGTGCTCGTTGGTTCCTAATGAAATCAAGGGCATGTATAAGTGTCTCTTCTCATTCGCATGGCACGATTCTGTGTAGCCTCTGCAAACGTGACTGCTATGTAGCTTTTGTTGACTGCAACTGTCACATGCATCCTGTATGCCTACGGCATGATCTTGAATCCCTTGACTTCGGGTGTGGGAGCAAATACACACTTTTTTTGAGGGAGGATATTATGGATATGGAAGCTGCAGCCAAGATGTTTGAGCAGGAAGATTGGATATTGGATGAGATAAGCAAACAAACCAAAAGTGACCAAAATATGTATTCATATCCGTTGTCAAATATGTTTCAGAGAGCTGAAGCAAATGGATATACACCTTATTGTGAGCTAAAGCTTGATTCTGTTATTGAATTTTATAATACTCCAGAACAGTCAACAAATAATCAGGAGTGTGCTACACAAAGTCAATTTGTTTTCAGACATTGCACTGAAAATCATAAAACAGAAGTGTCCGAGGTTTCCTTGTCTTCTGCTGCATCCACTCTTTGTTCTCTTTCAGAACATCTTGAGAGCTTCTCTCCTCCCAAAAATCAGGCTGAGGGGCATAATAACTTAAATTCAGGTGTTATTGATTATGAAGAGCTTGGGGAAAGAAGATCCATCAGTGCATGTGAATCTTCACCATCCCCTGCTCTTTATCATGAAAGCTCGGTTAAACCGCATGGTGATCTCCATAGATTTGACACAAAGCCCATTGTGGATAATGATAGTGATGATTCTGATTCAGGGATATTTAGGGTAAAGCGCCCTTCTTCTCTGAAAGCAGAGAGGAGAAATATGAATGGATTGATGTCTTCAAAGCATTCTGAGCAGCAGGGACTTAAACGATTGAAGAAAGTCCTTCCTGAAGGAAAAAGTGGGCAACCAATGAGTTTCAGCAGAACCAATGAATCCAGTTACAAATATAGTTACCCTGTTAATCACAAAGTTGATGGCGAAATTTCCTCCAAGGATAGATTTGCAAGGGGAAATAGCATTCCCATTTCTATAAGATACAAAAAGATGGGCAATGAGGAAATAAGTATGCAACGAGATCACCACCGGAGAGATAGGTTGCAGCAAACTTATAGGGAACCACCTTCGATTGAGATGGGGCCAAAGCGCCTTAAAGTCCGAGGCCCTTCATTTTTGGGCTTAGAGAGCAGATTGAATTGA 2577 0.4067 MVERRMCLSKEARNGLEYLKRKRLQRAKSITDTRTSIANMMNRSGGDALRASASCDVRLHGNVDAFSKRKVDKFDTNDLEWTDKIPECPVYSPTKEEFEDPLIYLQKIAPEASKYGICKIISPLNASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTFFLSGRNYTFHDYEKMANKVFARRYCSAGCLPATYLEKEFWQEIGCGKMETVEYACDVDGSAFSSSPTDQLGNSKWNLKKLSRLPKSILRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALEFERVVREHVYTTDILSSDGEDGAFDVLLGKTTLFPPNILLEHKVPVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLLHTCLELEDSDLLSSDLFSHNSIKISFVNLMRFQHCARWFLMKSRACISVSSHSHGTILCSLCKRDCYVAFVDCNCHMHPVCLRHDLESLDFGCGSKYTLFLREDIMDMEAAAKMFEQEDWILDEISKQTKSDQNMYSYPLSNMFQRAEANGYTPYCELKLDSVIEFYNTPEQSTNNQECATQSQFVFRHCTENHKTEVSEVSLSSAASTLCSLSEHLESFSPPKNQAEGHNNLNSGVIDYEELGERRSISACESSPSPALYHESSVKPHGDLHRFDTKPIVDNDSDDSDSGIFRVKRPSSLKAERRNMNGLMSSKHSEQQGLKRLKKVLPEGKSGQPMSFSRTNESSYKYSYPVNHKVDGEISSKDRFARGNSIPISIRYKKMGNEEISMQRDHHRRDRLQQTYREPPSIEMGPKRLKVRGPSFLGLESRLN* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01268 858 SMART JmjN_1 87 128 IPR003349 -
Rops1g01268 858 FunFam Lysine-specific demethylase isoform A 83 432 - -
Rops1g01268 858 MobiDBLite consensus disorder prediction 816 858 - -
Rops1g01268 858 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Rops1g01268 858 SUPERFAMILY Clavaminate synthase-like 166 421 - -
Rops1g01268 858 PANTHER LYSINE-SPECIFIC DEMETHYLASE 80 764 - -
Rops1g01268 858 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Rops1g01268 858 Gene3D Cupin 88 439 - -
Rops1g01268 858 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Rops1g01268 858 ProSiteProfiles JmjC domain profile. 235 405 IPR003347 -
Rops1g01268 858 SMART cupin_9 232 405 IPR003347 -
Rops1g01268 858 MobiDBLite consensus disorder prediction 816 830 - -
Rops1g01268 858 Pfam jmjN domain 89 121 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01268 Rops-Chr1 29004508 29011191 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01268 85 544 JUMONJI Transcription Factor Family AT2G34880 32.649 3.47e-63 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Rops1g01268 JmjC 1.6e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01268 - - gmx:100798611 1501.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01268 1 29004508 29011191 Rops1g01268 1 29004508 29011191 ECH