Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01267 ATGGAGCTATTCCCAGCACAACCAGACTTGTCCTTGCAAATCAGCCCTCCAAACAGCAAATCCACATCAAGTTGGAGAAGAACAACAGAAGAAGATATGGATTTGGGGTTCTGGAAGAGAGCTTTGGATGCCAGAAACTCCATATCATCAATGGCCAAAACTGATACATGTTTTGACCTCTCACTCTCAAATCCAAGGCCTTCAGATTCCAACACCACCAACCTCCTTCATCACTTCCAAAATGGTAATGCCAACCCCTTCCAATCTCTTCAGAAGAACCATTACCTTCACCATCAGCCACTCTTCCAGCACCACCACCAAAGCCTAAGCCAAGAGCTTGGTTTTCTCAGACCCATAAGAGGAATCCCAGTTTACCAAAACCCTCCCCCTATGCCATTCACTCAACAACAACAACATCATCATCATCCCCTTGAAGCTTCCAATCCTTCATCTCTTTCCAACACCAACACAGGTTCAAGCCCTTTTCAGTCACAGGCTTTGATGCGGTCAAGGTTCTTGTCACGCTTCCCTGCAAAACGCAGCATGAGGGCTCCAAGGATGCGTTGGACTACTACACTCCATGCTCGCTTTGTTCATGCTGTTGAGCTCTTGGGTGGCCATGAAAGGGCTACACCCAAATCAGTTCTCGAGCTAATGGATGTGAAGGATCTCACTTTAGCCCATGTTAAGTCTCATTTACAGATGTACCGGACGGTGAAAACTACAGATAGAGCAGCGGCTTCATCAGGGCAATCAGATGTATACGATAATGGATCATCTGGAGATACTTCTGATGATTTAATGTTTGACATCAACTCTTCAAGAAGGTCTGATCTATCCATCAATAAGCAGGGAAGATCAAGTGTTAATCAAGATAAGGAATGTCATGGTCTTTGGAGCAACTCTTCCAGGGAAGCTTGGTTGCATGGCAAGCCAAAGGCTGATTCTATTGGAAATGTGCCTTCTCTTGAGAAGGAAATGGATCCAAAGTGCCTAAGCTATGAGAGAATATCAGATGGAAGTTCATCCTCAAACATTTCAGGATCAAGCCCTAAGAAACCTAATTTGGATTTGGAATTCACCTTGGGCCAACCTCTTTGA 1101 0.4487 MELFPAQPDLSLQISPPNSKSTSSWRRTTEEDMDLGFWKRALDARNSISSMAKTDTCFDLSLSNPRPSDSNTTNLLHHFQNGNANPFQSLQKNHYLHHQPLFQHHHQSLSQELGFLRPIRGIPVYQNPPPMPFTQQQQHHHHPLEASNPSSLSNTNTGSSPFQSQALMRSRFLSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDVYDNGSSGDTSDDLMFDINSSRRSDLSINKQGRSSVNQDKECHGLWSNSSREAWLHGKPKADSIGNVPSLEKEMDPKCLSYERISDGSSSSNISGSSPKKPNLDLEFTLGQPL* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01267 366 NCBIfam myb-like DNA-binding domain, SHAQKYF class 185 238 IPR006447 GO:0003677
Rops1g01267 366 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 365 IPR044847 GO:0000976|GO:0006355|GO:0010158
Rops1g01267 366 MobiDBLite consensus disorder prediction 336 354 - -
Rops1g01267 366 MobiDBLite consensus disorder prediction 126 163 - -
Rops1g01267 366 MobiDBLite consensus disorder prediction 1 27 - -
Rops1g01267 366 Pfam Myb-like DNA-binding domain 186 237 IPR001005 -
Rops1g01267 366 MobiDBLite consensus disorder prediction 243 269 - -
Rops1g01267 366 MobiDBLite consensus disorder prediction 330 366 - -
Rops1g01267 366 FunFam Myb family transcription factor 183 241 - -
Rops1g01267 366 Gene3D - 184 241 - -
Rops1g01267 366 SUPERFAMILY Homeodomain-like 182 238 IPR009057 -
Rops1g01267 366 MobiDBLite consensus disorder prediction 131 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01267 Rops-Chr1 28972985 28977961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01267 1 365 G2-like Transcription Factor Family AT4G17695 40.000 7.79e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops1g01267 Myb_DNA-binding 1.7e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01267 - - aprc:113868756 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01267 1 28972985 28977961 Rops1g01267 1 28972985 28977961 ECH