Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01261 ATGAGCATTCAGGATTTCGCGTCTGGTGCTTCCCGGTGCAACCTCATTAATGGCAAGCAAGACCCGACGCAGGCGGTGGTTTCCGGCGTTTTTCAGATCAACACCGCCGTATCCACGTTTCAGAGGCTCGTCAATTCCCTCGGAACCCCCAAAGATACGCTCGAGCTCCGTGATAAGCTGCACAAGACAAGATTGCACATTGCACAATTGGTGAAGGATACTTCGGATAAACTTAAGCAAGCTAGTGAAATTGATCACCATGCTGATGTTAATCCAAACAAGAAGATAGCAGATGCTAAACTTGCGAAGGATTTTCAGGTTGTGTTGAAAGAATTTCAGAAGGTGCAGCGTCTTGCAGCTGAGAGGGAATCAGCTTACACTCCTTTAGTTCCACAAGCAGTTTCCAGCAATACAGCCAGCGAAGTCAATGCTAGTGCTGATAAGAGTCCAGAGCAGCGTGCCCTTCTTATGGAATCCAAGAGACTGGAGGTATCATTCTTAGATAATGAAATTTCCTTCAATGAGGCTATCATTGAGGAAAGAGAGCAAGGCATTCAAGAAATCCAGCAGCAAGTTGGTGAAGTAAATGAGATTTTCAAAGATCTTGCTGTGCTTGTTGATGAGCAAGGAGCAATGATTGATGATATTGGGTCCAACATTGAGCATTCTCATGATGCAGCTGTTCAAGCAAAATCTCAACTTGTGAATGCTTCGAAGACACAAAAATCAAACTCGTCTTTGACATGCTTGCTCTTGGTGATATTTGGGATCGTGCTTCTCATTATCTTCATTGTTCTTGCTGCTTAG 807 0.4424 MSIQDFASGASRCNLINGKQDPTQAVVSGVFQINTAVSTFQRLVNSLGTPKDTLELRDKLHKTRLHIAQLVKDTSDKLKQASEIDHHADVNPNKKIADAKLAKDFQVVLKEFQKVQRLAAERESAYTPLVPQAVSSNTASEVNASADKSPEQRALLMESKRLEVSFLDNEISFNEAIIEEREQGIQEIQQQVGEVNEIFKDLAVLVDEQGAMIDDIGSNIEHSHDAAVQAKSQLVNASKTQKSNSSLTCLLLVIFGIVLLIIFIVLAA* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01261 268 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 175 237 IPR000727 -
Rops1g01261 268 Pfam Syntaxin-like protein 28 126 IPR006011 GO:0016020
Rops1g01261 268 SMART tSNARE_6 170 237 IPR000727 -
Rops1g01261 268 SMART SynN_4 10 124 IPR006011 GO:0016020
Rops1g01261 268 CDD SNARE_Qa 178 235 - -
Rops1g01261 268 PANTHER SYNTAXIN 24 260 IPR045242 -
Rops1g01261 268 FunFam Syntaxin-22 like 17 130 - -
Rops1g01261 268 Pfam SNARE domain 212 262 IPR000727 -
Rops1g01261 268 Gene3D - 17 130 - -
Rops1g01261 268 FunFam Syntaxin-22 like 168 268 - -
Rops1g01261 268 ProSitePatterns Syntaxin / epimorphin family signature. 181 220 IPR006012 GO:0005484|GO:0006886|GO:0016020
Rops1g01261 268 Gene3D - 170 268 - -
Rops1g01261 268 SUPERFAMILY t-snare proteins 20 230 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01261 Rops-Chr1 28872515 28875364 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01261 1 256 SNARE and Associated Proteins AT5G46860 72.692 6.86e-132 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01261 - - gmx:100810149 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01261 1 28872515 28875364 Rops1g01261 1 28872515 28875364 ECH
Rops1g01261 1 28872515 28875364 Rops2g02830 2 49302474 49307593 PCT