Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01260 ATGACATTGGTAATCAGAGAGAGGAGACACAAGCGGGCTCTAAGGCTTTCCTTACCAAAACCTCAAATCCCATCATCTGATTTTTCCCACCAAACCCACATGCCAGCGTTGTTGCCATCACCATCTTCTCATGCAGACTCTTCTCCAGGCATCAGAAACCTTTCAGACCTTGAGAAAATCGCAGTACTTGGCCATGGCAATGGTGGCACAGTCTATAAAGTTCATCACAAGAAGAACCATTCCTTTTATGCATTGAAAGTCCTACGCTTCAATGAGAATGCCATTGGCATCCGTCAACCCGCTACACTAGAGGCTGAGATTCTCAAACGAGTGGATTCCCCATATATAGTAAGGTGTCATGCAGTTTTTGACAATGGTAATTGCAGTGAAGCTGATAGTAACGGAGGTGACATTAGCTTTGTTATGGAATACATGGAAGGAGGGTCTTTGCATGATGTGTTAAGAGAACATCATAGACTACCAGAGGATGTTATTTCTGTCTTGGCTAAGCGTGTCTTGGAAGGGCTCAACTATTTACATGGCATGCACATTGTGCATAGAGATATTAAACCCTCAAACTTGCTTGTGAATTACAAAGGGGAGGTGAAGATTGCAGACTTTGGAGTCAGTCACGTAGTGGAAGGAAGGTTTGATGCAAATGACTCAAATGCAGGCACATGTGCTTATATGAGCCCAGAAAGAGTTGATCCAGAGAGATGGGGTGGTGAAAATGTAGATGAGTTTAAAGGAGATGTGTGGTCACTTGGAGTGGTGATGTTGGAATGCCTTTTGGGTCATTTTCCCTTGATTGGTCCAGGGCAGAGACCAGATTGGGTAACTTTGATGTGTGCAATTTGTTTTGGTGAGAAACTTGACATGCCAGAGAAGGCATCACCAGAGTTCCAGAATTTAGTCAGAAGGTGCCTTGAGAAGGATTGGAGGAAGAGAGCAACAGTGTTGGAGCTTCTTCACCACCCTTTTGTGAATAGAAACTGTTGCTGTTCTAGCAAAGGGCTGGGAGATTATGTTCTTCGTGGGTGA 1041 0.4419 MTLVIRERRHKRALRLSLPKPQIPSSDFSHQTHMPALLPSPSSHADSSPGIRNLSDLEKIAVLGHGNGGTVYKVHHKKNHSFYALKVLRFNENAIGIRQPATLEAEILKRVDSPYIVRCHAVFDNGNCSEADSNGGDISFVMEYMEGGSLHDVLREHHRLPEDVISVLAKRVLEGLNYLHGMHIVHRDIKPSNLLVNYKGEVKIADFGVSHVVEGRFDANDSNAGTCAYMSPERVDPERWGGENVDEFKGDVWSLGVVMLECLLGHFPLIGPGQRPDWVTLMCAICFGEKLDMPEKASPEFQNLVRRCLEKDWRKRATVLELLHHPFVNRNCCCSSKGLGDYVLRG* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01260 346 MobiDBLite consensus disorder prediction 22 50 - -
Rops1g01260 346 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524
Rops1g01260 346 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 39 331 - -
Rops1g01260 346 FunFam Mitogen-activated protein kinase 2 147 339 - -
Rops1g01260 346 CDD PKc_MAPKK_plant_like 55 329 - -
Rops1g01260 346 FunFam Mitogen-activated protein kinase kinase 1 39 146 - -
Rops1g01260 346 ProSiteProfiles Protein kinase domain profile. 57 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01260 346 Gene3D Transferase(Phosphotransferase) domain 1 143 339 - -
Rops1g01260 346 Gene3D Phosphorylase Kinase; domain 1 40 142 - -
Rops1g01260 346 SMART serkin_6 57 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01260 346 MobiDBLite consensus disorder prediction 17 50 - -
Rops1g01260 346 Pfam Protein kinase domain 58 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops1g01260 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Rops1g01260 346 SUPERFAMILY Protein kinase-like (PK-like) 32 331 IPR011009 -
Rops1g01260 346 PRINTS Tyrosine kinase catalytic domain signature 142 155 IPR001245 GO:0004672|GO:0006468
Rops1g01260 346 PRINTS Tyrosine kinase catalytic domain signature 250 272 IPR001245 GO:0004672|GO:0006468
Rops1g01260 346 PRINTS Tyrosine kinase catalytic domain signature 297 319 IPR001245 GO:0004672|GO:0006468
Rops1g01260 346 PRINTS Tyrosine kinase catalytic domain signature 178 196 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01260 Rops-Chr1 28865937 28866977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01260 1 329 MAP Kinase Kinase Gene Family AT1G32320 53.191 2.09e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Rops1g01260 Pkinase 1.4e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01260 K20604 - gmx:100817973 594.349