Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01259 ATGCTAAATTGTGTATCCCCTGACGACGTCGTTTTTCTCGAATTCAATTTCCCGACATGGACGGACTTCGTTAGACAGTTAAATACATATGGTTTTAGGAAGGTCGATCCAGATCGCTGGGAATTTGCAAATGAGGGTTTTTTGAGGGGTCAAAAGCACTTGCTTAGGAGTATAACTCGACGAAAACCTGCCCATGGTCATAATCATCAACAGGCTCAGCAACCACATGGACAGAGTTCATCAGTAGGGGCATGTGTAGAAGTTGGCAAGTTTGGGCTTGAGGAAGAGGTTGAGAGGCTCAAAAGAGATAAGAATGTGCTCATGCAAGAGCTAGTGAGATTGAGACAGCAGCAACAGACCACTGATAACCAGCTGCAGGCAATGGTTCAACGACTTCAGGGAATGGAGCAACGACAACAGCAAATGATGTCATTCCTTGCAAAAGCTGTCCAGAGCCCTGGCTTCTTTGCTCAGTTTGTACAACAGCAAAATGAGAGCAATAGGCGCATAACTGAAGTCAACAAAAAGCGTCGGCTCAAGCAGGAAAGCATCGCTGAAACAGAACGTACTGCTGCTCCTGATGGACAAATTGTTAAATATCAACCTCTGATAAATGAAGCGGCAAAAGCAATGCTAAGGAAGATCATGAAATGGGATACCTCTCGTGTAGAATCTTTTAATAAAAACCCTGATAATTACTTAATTGGTGATGGTTTTTCATCATCCAGTGCAATGGACTGTAGCAGCTCTTCAAGCTGGAATTCTGGAGTAACTCTTCAAGAGGTCTCTCCAGCTTCAATGCAGTCTTCTCACATTCCAGCTGCAATGGTGACTCAAGGACACAACCCCCCGGCAGAAAAACCTGAAATTCTATCTGTACAACCGCAACCTGCAGCTTCTGACAAAGTTATGAAGGATGGAGCACGAGAGACACCTTCTATCCCTGTTTCTCAAGCAGATGTGATCATGCCAGATCTTTCTTCAATAACAGAGATGGTGCCAGGAAGTATTCTTGATATTCCGGAAGAAAATTATATGGGTCCTGATACAGATGAGGGATATATAGATCCTACTTCACTGGGAGTTGGCGGGTCATTTCCCATTGATTTTGAAGGTCTCTCACCCGATGCAGACATTGATGATTTGTTAGCCAATCCTTCTATTTGGGATGATCTTTTGCAAACTCCAGTACAAGAGGATATCGAGACCAATGTTGCAGAAGTATCCACAGGGAATGAGGTGCAGCCAAGGGAAAATGGATGGGACAAAACTCAACATATGGATCAACTTACAGAGCAGATGGGTCTTCTTTCTTCTGATGCAGAAAGAGTTTGA 1335 0.4382 MLNCVSPDDVVFLEFNFPTWTDFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSITRRKPAHGHNHQQAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQAMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNESNRRITEVNKKRRLKQESIAETERTAAPDGQIVKYQPLINEAAKAMLRKIMKWDTSRVESFNKNPDNYLIGDGFSSSSAMDCSSSSSWNSGVTLQEVSPASMQSSHIPAAMVTQGHNPPAEKPEILSVQPQPAASDKVMKDGARETPSIPVSQADVIMPDLSSITEMVPGSILDIPEENYMGPDTDEGYIDPTSLGVGGSFPIDFEGLSPDADIDDLLANPSIWDDLLQTPVQEDIETNVAEVSTGNEVQPRENGWDKTQHMDQLTEQMGLLSSDAERV* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01259 444 MobiDBLite consensus disorder prediction 277 301 - -
Rops1g01259 444 Coils Coil 90 117 - -
Rops1g01259 444 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 243 IPR027725 -
Rops1g01259 444 Pfam HSF-type DNA-binding 15 61 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops1g01259 444 SUPERFAMILY "Winged helix" DNA-binding domain 14 61 IPR036390 -
Rops1g01259 444 SMART hsfneu3 2 61 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops1g01259 444 MobiDBLite consensus disorder prediction 62 81 - -
Rops1g01259 444 Gene3D - 9 62 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01259 Rops-Chr1 28848061 28857150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01259 9 438 HSF AT1G32330 50.459 2.39e-127 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Rops1g01259 HSF_DNA-bind 3.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01259 K09419 - gmx:100815121 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01259 1 28848061 28857150 Rops1g01259 1 28848061 28857150 ECH