Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01257 ATGATGAGAAGGACGAAAGGGAAACAGCAACGTTATGAAACCTTCAATGCAAAGCCTTCTTCTACTTCACAACCGCAATCGAAATTTCGCTATGTGGAAAAGTCCGAAGTGGTTTCTTCTTCCAACTCTGTGGCGGCGGAACAAGTTGCCCCAAATCACGAAAAAGAAAACAGGGATGCCTCGGAGCTGAATAGTGGTAACACCGTTGATGACGTGGCAGAGGAAGGGGATTGTGATATTGATATTTTGCGTAGGCTTGATAAGTTGCTCAGTGATATCGAAGAACCTCAATTGTCTGAGGAACAGATCACAATCAATGACCAATTGCAACAAGATGAGTTACTTGTGGTGGAGTCAATTTATGGAGAAAACGTTTTCACCCTTGAGAGATGGAAAGGCCTGCGTTGTTTTCAGATACACATATACATTGATGTTTTGGGTGAAATTGCCATTACCGCTAAGCTGAACACTTCTAATGAACTTGAGGCTGTAAGCAGCAATTCAGATGACTTCTTGTACTCCTTCAAAGTCCAGTATCTTCCACCGATTGTTTTGATGTGTTTATTACCCAAGTCATACCCAAGCCACCAACCACCTATATTTACAATCTCTGTTAAGTGGTTGGAACCCTTAAAAATTTTAAGTCTATGCTCTGTGTTGGATTCAATATGGGCAGAACAGCAAGGACAGGAAGTAATTTACCATTGGGTAGGATGGTTACATGGTTCTTCTCTTTCTCATCTGGAATTTGATAAGGAGATTATACTAGGTCCTTATGGCATGAATCATGTTGTAGACAAGCGTGTGATATCAGGAATGGGTTCCATTGATGTTGATATTCCATTTTTTCGAAGTTACAACAGTGAGAGACACCATGAGAACTTCCTCAAAGAATTGCATGAATGTTGCATTTGCTATAGTGAATATCCAGGTACTGAGTTTCTCCAGCTGCCATGTAAGCATTTTTTTTGCCTCAAATGTTTGAAGACCTTCACCCAGATACATGTAAAAGAAGGCACCATTAGTAATCTTCAATGTCTTGATGCAAAATGTACGGTTATGATTCCACCTGGCCTTTTAAAACACTTGCTGGATGACAATGATTATGAACGCTGGGAATCCATGATGTTGGAGAAAGCACTTGCATCAATGTCTGATGTTGTTTATTGCCCAAGATGTGAAACACCTTGTATAGAGGATGAAGACCAGCATGCTCAATGCTCAAAATGCTTTTTTAGCTTTTGTACCCTTTGCAGGGAAAAACGCCATGTTGGCATAGCATGCATGACACTAGATATGAAGCTTCAGATTTTGCAGGACCGTCAAAATTCATCTCAATTAAAGGGAGATCAAAAGCGTAGGGAACTTGAAATGATCAACGAAATGCTCAGTATGAAAGAAATTCGTCGTGATTCCAAGCTGTGCCCTTCTTGTGACATGGCAATTTCTCGAACTGAAGGTTGTAACAAAATGAAGTGCAGTAATTGTGAACAGTACTTCTGTTACCGTTGCAACAAAGCAATTGATGCATCGGATCCATATGGACATTTCAGGGATGGATCATGTGAATTGTTCCCACGAGAAATGGTTGAGACCTGGCAAGAGCGCATAAATCCTCGCCAGGCGGTAGGACAATTACAGGCTGAACTCTTTCCTCAACATGGCTTGGCTTGTCCTAATTGTCATCAATTTAATGCAAAGATTGGAAACAACAATCACTTGTTTTGCTGGGCATGCCAAAGCCATTACTGCTACTTATGCAAAGAGATTGTGAGGCGTGGCATTAAGCATTATGGACCTAAAGGCTGCAAACAGCACTCCGAGGGATAG 1830 0.412 MMRRTKGKQQRYETFNAKPSSTSQPQSKFRYVEKSEVVSSSNSVAAEQVAPNHEKENRDASELNSGNTVDDVAEEGDCDIDILRRLDKLLSDIEEPQLSEEQITINDQLQQDELLVVESIYGENVFTLERWKGLRCFQIHIYIDVLGEIAITAKLNTSNELEAVSSNSDDFLYSFKVQYLPPIVLMCLLPKSYPSHQPPIFTISVKWLEPLKILSLCSVLDSIWAEQQGQEVIYHWVGWLHGSSLSHLEFDKEIILGPYGMNHVVDKRVISGMGSIDVDIPFFRSYNSERHHENFLKELHECCICYSEYPGTEFLQLPCKHFFCLKCLKTFTQIHVKEGTISNLQCLDAKCTVMIPPGLLKHLLDDNDYERWESMMLEKALASMSDVVYCPRCETPCIEDEDQHAQCSKCFFSFCTLCREKRHVGIACMTLDMKLQILQDRQNSSQLKGDQKRRELEMINEMLSMKEIRRDSKLCPSCDMAISRTEGCNKMKCSNCEQYFCYRCNKAIDASDPYGHFRDGSCELFPREMVETWQERINPRQAVGQLQAELFPQHGLACPNCHQFNAKIGNNNHLFCWACQSHYCYLCKEIVRRGIKHYGPKGCKQHSEG* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01257 609 Gene3D - 443 549 - -
Rops1g01257 609 SUPERFAMILY RING/U-box 370 433 - -
Rops1g01257 609 FunFam RBR-type E3 ubiquitin transferase 297 381 - -
Rops1g01257 609 SUPERFAMILY RING/U-box 462 517 - -
Rops1g01257 609 CDD Rcat_RBR_RNF14 460 525 IPR047548 GO:0008270
Rops1g01257 609 CDD BRcat_RBR_RNF14 381 432 - -
Rops1g01257 609 ProSitePatterns Zinc finger RING-type signature. 319 328 IPR017907 -
Rops1g01257 609 MobiDBLite consensus disorder prediction 12 48 - -
Rops1g01257 609 FunFam RBR-type E3 ubiquitin transferase 443 552 - -
Rops1g01257 609 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 153 512 IPR031127 GO:0004842|GO:0016567
Rops1g01257 609 SMART ring_2 390 478 IPR001841 -
Rops1g01257 609 SMART ring_2 558 587 IPR001841 -
Rops1g01257 609 SMART ring_2 302 349 IPR001841 -
Rops1g01257 609 ProSiteProfiles Zinc finger RING-type profile. 302 346 IPR001841 -
Rops1g01257 609 MobiDBLite consensus disorder prediction 1 71 - -
Rops1g01257 609 CDD RING-HC_ITT1-like 296 355 - -
Rops1g01257 609 ProSiteProfiles TRIAD supradomain profile. 298 528 IPR044066 -
Rops1g01257 609 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 385 IPR013083 -
Rops1g01257 609 ProSiteProfiles RWD domain profile. 112 247 IPR006575 GO:0005515
Rops1g01257 609 SMART ibrneu5 370 428 IPR002867 GO:0008270
Rops1g01257 609 SMART ibrneu5 457 522 IPR002867 GO:0008270
Rops1g01257 609 SUPERFAMILY RING/U-box 551 606 - -
Rops1g01257 609 SUPERFAMILY RING/U-box 297 381 - -
Rops1g01257 609 Pfam RWD domain 108 241 IPR006575 GO:0005515
Rops1g01257 609 SMART RWD2001b 112 247 IPR006575 GO:0005515
Rops1g01257 609 Pfam IBR domain, a half RING-finger domain 469 508 IPR002867 GO:0008270
Rops1g01257 609 Pfam IBR domain, a half RING-finger domain 370 428 IPR002867 GO:0008270
Rops1g01257 609 Gene3D Ubiquitin Conjugating Enzyme 98 250 IPR016135 -
Rops1g01257 609 SUPERFAMILY UBC-like 106 241 IPR016135 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01257 297 530 ARIADNE family AT3G27710 23.967 4.49e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01257 K11971 - gmx:100500662 964.526
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01257 1 28831632 28837054 Rops1g01257 1 28831632 28837054 ECH