Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01255 ATGTCAGACCGGGGTACCTTCTCCGGTGACTCGGCCATTGGAGGAGAGAGAAAAAAGGAACATAAGGTTCCTTTGTTAAAGCTCTTCTCCTTTGCTGACTTTTATGACTATGTGTTAATGGCTGTTGGATCTGTTGGGGCATGTATTCATGGTGCTTCTGTTCCTGTTTTCTTTATCTTCTTTGGAAAGTTGATTAATGTTATAGGCTTGGCTTATCTTTTCCCCAAGGAAGCTTCTCACCAAGTTGCCAGGTACTCGTTGGATTTTGTGTATCTAAGTGTAGCAATATTGTTTTCATCTTGGACAGAGGTGGCTTGTTGGATGCATACTGGGGAACGTCAAGCAGCAAAGATGAGAATGGCTTATTTAAAAGCAATGCTGAATCAAGATATTAGCCTATTTGATACTGAGGCATCAACTGGAGAGGTCATTTCTGCAATTACAAGTGATATTCTCATTGTTCAAGATGCTCTATCTGAGAAGGTAGGCAACTTCATGCATTACATAAGCCGATTTATAGCGGGCTTTACTATTGGCTTTGTAAGAGTGTGGCAGATCAGTTTAGTCACACTTTCAATTGTTCCCTTGATTGCACTTGCTGGAGGCCTTTATGCATATGTGACAATTGGGCTTATTGCAAAAATTAGAAAAGCCTACGTGAGAGCTGGTGAAATAGCTGAAGAGGTAATAGGCAATATTAGAACAGTACAAGCATTTGCAGGAGAAGAAAGAGCAGTAAGATCATATAAAGAGGCTCTCATGAAAACTTATGTAAACGGTCGAAAAGCAGGTTTAGCAAAGGGTCTTGGACTAGGCTCAATGCATTGTGTGCTTTTTCTATCTTGGGCTTTGCTTGTTTGGTACACTAGTGTTGTTGTTCACAAGAATATTGCCAATGGGGGAGAGTCTTTCACTACCATGCTCAATGTCGTAATCTCTGGCCTGTCACTTGGGCAGGCAGCACCAGATATCTCAGCATTCATCCGAGCAAAGGCTGCAGCTTATCCCATTTTTGAGATGATTGAGAGGGACACAGTGAGCAAAAGAAGCTCAAAAACTGGTCGCAAATTAAGCAAATTGGAGGGTCATATCCAGTTTAAGGATGTTTGTTTCAGTTACCCTTCTCGTCCAGATGTAGTAATCTTCAATAATCTATGTCTTGACATTCCTTCAGGGAAAATTGTGGCCCTTGTGGGAGGAAGTGGTTCTGGAAAAAGCACTGTCATATCATTGATTGAACGTTTTTATGAACCTCTTTCTGGTCAAATACTATTAGATAGGAATGATATCAGGGAACTTGATCTCAAATGGCTTAGGCAGAAAATTGGTCTAGTTAATCAAGAACCTGCTCTTTTTGCTACAAGCATCAAGGAGAACATATTGTATGGAAAAGACGATGCCACTCTTGAAGAACTAAAACGTGCTGTGAAGCTCTCAGATGCTCAGTCTTTCATTAACAACCTTCCTGATAGATTAGAAACTCAGGTTGGTGAGAGAGGGATACAACTATCAGGTGGACAAAAGCAAAGGATTGCAATATCTCGTGCTATTGTGAAGAATCCATCAATCCTTTTGTTAGATGAAGCAACCAGTGCTCTAGATGCTGAGTCTGAGAAGAGTGTGCAGGAGGCTCTTGATCGTGTCATGGTTGGTAGAACAACTGTGATAGTGGCACACAGACTTTCTACCATTAGGAATGCAGATATGATTGCTGTTGTACAAGGAGGGAGGATTGTGGAAACTGGTAACCATGAAGAGCTCATTTCCAACCCAACTAGTGTATATGCATCTCTTATTCAACTCCAAGAGGCAAGTTCTTTGCAACGCCTACCCTCAGTTGGTCCTAGCTTGGGACGGCAATCAAGCATAAGCCACTCAAGAGAATTATCTCGTACAACAACAAGCTTTGGTGGTAGTTTTCGATCAGATAAAGACTCTATTGGCCGGGTTGGTGCTGATGAAGCAGAAAAGGCAAGCAAGTCAAGGCATGTTTCAGCAGCAAGACTATATTCTATGGTTGGTCCTGACTGGTTTTATGGGGTTTTTGGGACCCTCTGTGCATTTATTGCTGGAGCACAGATGCCACTTTTTGCACTTGGAATCTCTCACGCTCTTGTATCATACTATATGGACTGGGATACAACACGCCATGAAGTCAAAAAACTTGCTTTCCTCTTTTGTGGAGGAGCAGTTGTAACTATCACTGTCCATGCCATTGAACATCTTTCCTTTGGAATCATGGGCGAGCGACTAACTCTTCGTGTGAGAGAAATGATGTTTTCTGCTATTTTGAAGAATGAAATTGGCTGGTTTGATGATACAAACAACACAAGTTCTATGCTTTCATCACGTTTAGAGACTGATGCGACCTTATTACGAACTATAGTTGTTGATCGTTCTACAATTCTGTTACAGAATGTTGGTTTAGTTGTTGGTTCATTTATTATTGCCTTCCTCTTGAACTGGAGAATAACACTAGTTGTCATAGCCACATATCCTTTGATCATTAGTGGTCACATCAGTGAGAAACTTTTCATGAAAGGCTATGGTGGCAACTTGAGCAAAGCATATCTAAAAGCCAACATGATGGCTGGGGAAGCTGTGAGCAATATACGCACTGTTGCCGCATTTTGTTCTGAAGAAAAGGTCCTTGACCTTTATTCTAATGAGCTTGTTGATCCTTCCAAACGTTCATTTCAACGGGGCCAAATAGCTGGCATATTCTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTGTGGTATGGATCTGTTTTGATGGGAAAGGAGCTTGCTAGCTTTAAGTCAGTTATGAAGGCATTTATGGTTTTAATTGTAACAGCACTGGCTATGGGGGAGACTTTGGCATTGGCCCCAGACCTTTTGAAAGGGAATCAAATGGTTGCATCAGTTTTTGAAGTGATGGATAGAAAGTCAGGAATAATGGGAGATACTGGAGAAGAGTTGAAGACAGTAGAGGGAACAATTGAGCTCAAAAGAATCAATTTCAGCTACCCTTCAAGGCCAGATGTGATTATTTTCAAGGATTTCAATTTAAGAGTGCCCGCAGGCAAGAGTATAGCCTTAGTGGGGCAAAGTGGTTCTGGTAAAAGCTCTGTGATCTCCCTCATACTCAGATTTTATGATCCAACATCTGGGAAGGTGTTAATTGATGGAAAAGACATCACAAGAATTAATCTGAAATCTCTTAGGAAACATATTGGTCTTGTGCAACAAGAACCAGCTCTTTTTGCAACATCAATTTATGAAAATATTCTTTATGGGAAGGAAGGTGCCTCTGATTCAGAAGTAATTGAAGCAGCTAAGCTTGCCAATGCTCATAACTTCATCAGTGGTCTCCCAGATGGCTACTCCACAAAAGTTGGTGAACGAGGAGTGCAACTATCTGGTGGCCAAAGACAAAGGGTAGCCATTGCTAGAGCTGTTTTAAAAAACCCTGAAATCTTGCTATTGGATGAAGCCACTAGTGCACTAGATGTGGAGTCAGAGCGTGTGGTACAACAAGCTCTTGACAGGTTAATGCAGAACAGAACAACAGTTATGGTGGCACATAGGCTATCCACAATAAGGAATGCAGACCAAATCTCAGTTTTACAAGATGGAAAGATAATTGAGCAAGGGACTCATTCAAGTCTCATAGAGAATAAAAATGGAGCATACTTTAAATTAGTCAACCTTCAACAACAACAACATCAATTATAG 3735 0.4112 MSDRGTFSGDSAIGGERKKEHKVPLLKLFSFADFYDYVLMAVGSVGACIHGASVPVFFIFFGKLINVIGLAYLFPKEASHQVARYSLDFVYLSVAILFSSWTEVACWMHTGERQAAKMRMAYLKAMLNQDISLFDTEASTGEVISAITSDILIVQDALSEKVGNFMHYISRFIAGFTIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKIRKAYVRAGEIAEEVIGNIRTVQAFAGEERAVRSYKEALMKTYVNGRKAGLAKGLGLGSMHCVLFLSWALLVWYTSVVVHKNIANGGESFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTVSKRSSKTGRKLSKLEGHIQFKDVCFSYPSRPDVVIFNNLCLDIPSGKIVALVGGSGSGKSTVISLIERFYEPLSGQILLDRNDIRELDLKWLRQKIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQSFINNLPDRLETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVIVAHRLSTIRNADMIAVVQGGRIVETGNHEELISNPTSVYASLIQLQEASSLQRLPSVGPSLGRQSSISHSRELSRTTTSFGGSFRSDKDSIGRVGADEAEKASKSRHVSAARLYSMVGPDWFYGVFGTLCAFIAGAQMPLFALGISHALVSYYMDWDTTRHEVKKLAFLFCGGAVVTITVHAIEHLSFGIMGERLTLRVREMMFSAILKNEIGWFDDTNNTSSMLSSRLETDATLLRTIVVDRSTILLQNVGLVVGSFIIAFLLNWRITLVVIATYPLIISGHISEKLFMKGYGGNLSKAYLKANMMAGEAVSNIRTVAAFCSEEKVLDLYSNELVDPSKRSFQRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKAFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSGIMGDTGEELKTVEGTIELKRINFSYPSRPDVIIFKDFNLRVPAGKSIALVGQSGSGKSSVISLILRFYDPTSGKVLIDGKDITRINLKSLRKHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISGLPDGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMQNRTTVMVAHRLSTIRNADQISVLQDGKIIEQGTHSSLIENKNGAYFKLVNLQQQQHQL* 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01255 1244 Gene3D - 354 603 IPR027417 -
Rops1g01255 1244 CDD ABC_6TM_Pgp_ABCB1_D2_like 670 985 - -
Rops1g01255 1244 FunFam ABC transporter B family member 1 27 363 - -
Rops1g01255 1244 CDD ABC_MTABC3_MDL1_MDL2 1000 1238 - -
Rops1g01255 1244 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524|GO:0016887
Rops1g01255 1244 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 337 - -
Rops1g01255 1244 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1000 1236 IPR003439 GO:0005524
Rops1g01255 1244 Gene3D ABC transporter type 1, transmembrane domain 646 988 IPR036640 GO:0005524|GO:0016020
Rops1g01255 1244 PANTHER ABC TRANSPORTER B FAMILY 16 605 IPR039421 -
Rops1g01255 1244 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 600 IPR003439 GO:0005524
Rops1g01255 1244 Gene3D ABC transporter type 1, transmembrane domain 27 605 IPR036640 GO:0005524|GO:0016020
Rops1g01255 1244 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 329 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops1g01255 1244 CDD ABC_MTABC3_MDL1_MDL2 364 602 - -
Rops1g01255 1244 FunFam ABC transporter B family member 2 801 997 - -
Rops1g01255 1244 SMART AAA_5 391 583 IPR003593 GO:0016887
Rops1g01255 1244 SMART AAA_5 1027 1213 IPR003593 GO:0016887
Rops1g01255 1244 MobiDBLite consensus disorder prediction 611 641 - -
Rops1g01255 1244 FunFam ABC transporter B family member 19 354 603 - -
Rops1g01255 1244 Pfam ABC transporter 383 531 IPR003439 GO:0005524
Rops1g01255 1244 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 681 967 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops1g01255 1244 Gene3D - 990 1244 IPR027417 -
Rops1g01255 1244 SUPERFAMILY ABC transporter transmembrane region 27 334 IPR036640 GO:0005524|GO:0016020
Rops1g01255 1244 MobiDBLite consensus disorder prediction 611 642 - -
Rops1g01255 1244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 993 1238 IPR027417 -
Rops1g01255 1244 ProSitePatterns ABC transporters family signature. 1139 1153 IPR017871 GO:0005524|GO:0016887
Rops1g01255 1244 SUPERFAMILY ABC transporter transmembrane region 668 981 IPR036640 GO:0005524|GO:0016020
Rops1g01255 1244 Pfam ABC transporter transmembrane region 45 312 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops1g01255 1244 Pfam ABC transporter transmembrane region 682 953 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops1g01255 1244 Pfam ABC transporter 1019 1167 IPR003439 GO:0005524
Rops1g01255 1244 FunFam ABC transporter B family member 4 990 1243 - -
Rops1g01255 1244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 602 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01255 Rops-Chr1 28791264 28799028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01255 35 608 Calmodulin-binding Proteins AT2G36910 39.003 1.45e-112 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01255 K05658 - gmx:100819045 2243