Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01254 ATGGGTAGGTCACCGTGTGGTGATGAGATTGGTGTGAAGAAAGGGCCATGGACACCAGAAGAAGATGAAAAGCTGATTGATTATATCAACAAACATGGCTATGGAAATTGGGGAACACTTCCAAAACGTGCAGGTTTGAATAGGTGTGGGAAGAGCTGCAGGCTAAGGTGGACAAACTATCTGAGACCTGATATCAAGAGAGGGAAATTCACTGAAGAAGAGGAGAGAATTATCATCAACCTTCATTCAGCCCTTGGAAACAAGTGGTCAAAGATTGCAGCACATCTTCCAGGAAGAACTGATAATGAGATCAAGAATTTCTGGAACACACACATAAGGAAGAAGCTTCTCAAGATGGGAATTGACCCTGAAACTCACAAGCCAAGGACTGACTTTAATCACCTCATGAGTCTTTCCCAGTTGCTTGGCATGTCAAACTTGGGAAATGCTATGAGTGGTACTTGGGGAAACCCTCTTGGTTTACAAGCAGAGCTAGCCAAAATGCAACTGCTACAAAATCTGTTGCAAATTATGAACAACAATTCATTTGTTAACATGGGTAATAACCCTTATAACCTCTCAGGCAATCCCAGCCTCAACCCATTCAATGTGTTTCTTAATGGGACAAACACCCTTCAAAGTAAGGAGCCTGTAGTCTTAAGTGGTGAAGAACATGCAAACTCTGGTCTATACTCTCAAGCACAAAGTGAGGATATTTTAAAATCATGGGCAGATGTAGAGGGTGTATCTAATCCACAACAAGATCTTGATCACAACAACATTAACAGCACTTCATATGAAAAGCAAGCAGAAAACCCACTTCCTGCATTGGTTGCAATCCCTCCAAAGATGGAAACCATCAACCAAATGGACAGTGCCTGTACCACAGCTCAAACATTTACCCAATCCCCTTCCAACACAATCTTTGATGAGTGGGAAAAGTTCCTTGAAGATGAAACAAACGAATCCTACTGGAAAGAGCTTCTAGACTTGACATCCACTTCTGCGTCCCCAATTTCGTGGTAG 1026 0.423 MGRSPCGDEIGVKKGPWTPEEDEKLIDYINKHGYGNWGTLPKRAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEEERIIINLHSALGNKWSKIAAHLPGRTDNEIKNFWNTHIRKKLLKMGIDPETHKPRTDFNHLMSLSQLLGMSNLGNAMSGTWGNPLGLQAELAKMQLLQNLLQIMNNNSFVNMGNNPYNLSGNPSLNPFNVFLNGTNTLQSKEPVVLSGEEHANSGLYSQAQSEDILKSWADVEGVSNPQQDLDHNNINSTSYEKQAENPLPALVAIPPKMETINQMDSACTTAQTFTQSPSNTIFDEWEKFLEDETNESYWKELLDLTSTSASPISW* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01254 341 CDD SANT 69 112 IPR001005 -
Rops1g01254 341 FunFam MYB-related transcription factor 13 66 - -
Rops1g01254 341 CDD SANT 16 61 IPR001005 -
Rops1g01254 341 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Rops1g01254 341 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops1g01254 341 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops1g01254 341 Gene3D - 69 116 - -
Rops1g01254 341 SMART sant 13 63 IPR001005 -
Rops1g01254 341 SMART sant 66 114 IPR001005 -
Rops1g01254 341 FunFam Transcription factor MYB39 69 130 - -
Rops1g01254 341 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 264 - -
Rops1g01254 341 Gene3D - 13 66 - -
Rops1g01254 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops1g01254 341 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops1g01254 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops1g01254 341 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops1g01254 341 Coils Coil 161 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01254 Rops-Chr1 28778349 28779625 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01254 1 330 MYB Transcription Factor Family AT4G17785 43.956 5.68e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops1g01254 Myb_DNA-binding 3.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01254 K09422 - gmx:778082 503.442