Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops1g01252 | ATGGGTAAAAAGAAACCCAAGGAGCCACAACAAACCCCTCAAAGTGACACCGTTTCACCCCCTCACGGCATTTTCAACTCGCTCTTTGGCACCGCGCCGGAACAGAACACCGCCACCGCCGCTTCTCTATTTTCCGATGACAACCCCTTTCGGAGAAAGCTTCAACAACCCGCTCCAGTTTCTGACACAACCAATCACACTCAAAGCCCTATCAATAGCGGCTTTGTGAACAATGATACCGGCGAAGAGAAGAAGAGAAAGAGGAAGAAAGAGAGAAACCCTAATCTCGATTTGGATTCCAAAATAGAAGTTTCGGAGAAAAAAAGGAAACACGGTTCGGATGAAAAAGGAGGGGAAAGGAAAGAACTTGATTTGGGTGCTGAAGGCGAAGAGGGGAAGAAGAAGAAGAGGAAAAGGGATGAGCTTGAGAAAGAGTGGGAGGATAAGAAGTATGGGAAGGTGGAGGGAGGAGAGGAAGGTGAAAAGGAAGGGGTTGGGAATAAAATTGTTGGGAGCAAGAGGAAGGTTCTGGATAATCCAGCTGATCTGTTGGTTTCAAAGGAAGGTTTTGATGATGAGGATAAGCTTTTGAGGACTATCTTTGTTGGGAATTTGCCTCTCAAGGTTAAAAAGAAGACTTTGTTGAAGGAGTTTAAGAAATTTGGTGAGGTTGAATCTGTTAGGATTCGCTCTGTTCCTATACAAGATACCAAAAAACCTAGAAAGGGAGCCATCCTTGCCAAGAAAATAAATGATTCGGGTGATAGTGTTCACGCATACATTGTTTTCAAAACTGAAGAATCTGCTCAGGCTTCTTTGTCACACAACATAACTGTGGTTGAAGGAAATCACATTCGTGTTGATAGGGCATGCCCACCCCGAAAGAAACATAAAGGGGAGAGTGCTTCACTTTATGATAATAAAAGAACTGTTTTTGTCGGCAACCTCCCATTTGATGTGAAGGATGAAGAACTTTATCAATTATTTTGTGGTATTTCCAACCTACAATCAACCATCGAAGCTGTTAGAGTGGTTCGAGATCCTCATCTAAATGTTGGAAAGGGTATTGCCTATGTGCTGTTTAAAACAAGGGAAGCTGCTAATTCTGTTGTTAAGAAACGGAACTTGAAGCTTCGGGATCGAGAGTTAAGACTCAGTCATGCCAAAGCAGATGCTACCCCATCTAAAAGGCCGAACTCATCACCAGCAAAAGCTCCTAGTACCCCTGCAAAGAAGCTGGCTGTGGTGGGTTCAAAATCTCCTTCGAGCAGTAATAACAGGTCAAACAGAAAAATTAATGCATCTTATCAGGGTCTGCGTGCGACCAAATCTGATGTCCACAAGAAAGTTCATGGAGGAGAAAAACTGAAAGAGCGCAACACGAAAAGGCCATCAGTTGCTGCCAGAAAGGCCAAAGCAAAATCGCCCAAGGAGGGTGGTACACCAAAACAAGCAGGGTTGAAACGCAAGCTGGATAGTCGTACTCCAGATAGCTCCCTAAGAAATAACAAAGCCAAAAAGAAGAGGTAG | 1530 | 0.4392 | MGKKKPKEPQQTPQSDTVSPPHGIFNSLFGTAPEQNTATAASLFSDDNPFRRKLQQPAPVSDTTNHTQSPINSGFVNNDTGEEKKRKRKKERNPNLDLDSKIEVSEKKRKHGSDEKGGERKELDLGAEGEEGKKKKRKRDELEKEWEDKKYGKVEGGEEGEKEGVGNKIVGSKRKVLDNPADLLVSKEGFDDEDKLLRTIFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDSGDSVHAYIVFKTEESAQASLSHNITVVEGNHIRVDRACPPRKKHKGESASLYDNKRTVFVGNLPFDVKDEELYQLFCGISNLQSTIEAVRVVRDPHLNVGKGIAYVLFKTREAANSVVKKRNLKLRDRELRLSHAKADATPSKRPNSSPAKAPSTPAKKLAVVGSKSPSSSNNRSNRKINASYQGLRATKSDVHKKVHGGEKLKERNTKRPSVAARKAKAKSPKEGGTPKQAGLKRKLDSRTPDSSLRNNKAKKKR* | 510 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops1g01252 | 509 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 288 | 477 | - | - | |
Rops1g01252 | 509 | Gene3D | - | 297 | 412 | IPR012677 | - | |
Rops1g01252 | 509 | MobiDBLite | consensus disorder prediction | 57 | 78 | - | - | |
Rops1g01252 | 509 | MobiDBLite | consensus disorder prediction | 442 | 502 | - | - | |
Rops1g01252 | 509 | MobiDBLite | consensus disorder prediction | 384 | 509 | - | - | |
Rops1g01252 | 509 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 200 | 242 | IPR000504 | GO:0003723 | |
Rops1g01252 | 509 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 311 | 383 | IPR000504 | GO:0003723 | |
Rops1g01252 | 509 | Gene3D | - | 194 | 296 | IPR012677 | - | |
Rops1g01252 | 509 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 309 | 390 | IPR000504 | GO:0003723 | |
Rops1g01252 | 509 | MobiDBLite | consensus disorder prediction | 1 | 147 | - | - | |
Rops1g01252 | 509 | MobiDBLite | consensus disorder prediction | 79 | 147 | - | - | |
Rops1g01252 | 509 | CDD | RRM1_RBM34 | 198 | 288 | - | - | |
Rops1g01252 | 509 | SUPERFAMILY | RNA-binding domain, RBD | 305 | 400 | IPR035979 | GO:0003676 | |
Rops1g01252 | 509 | MobiDBLite | consensus disorder prediction | 11 | 44 | - | - | |
Rops1g01252 | 509 | MobiDBLite | consensus disorder prediction | 417 | 440 | - | - | |
Rops1g01252 | 509 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 198 | 292 | IPR000504 | GO:0003723 | |
Rops1g01252 | 509 | CDD | RRM2_RBM34 | 310 | 386 | IPR034221 | - | |
Rops1g01252 | 509 | SUPERFAMILY | RNA-binding domain, RBD | 191 | 298 | IPR035979 | GO:0003676 | |
Rops1g01252 | 509 | SMART | rrm1_1 | 199 | 288 | IPR000504 | GO:0003723 | |
Rops1g01252 | 509 | SMART | rrm1_1 | 310 | 386 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops1g01252 | Rops-Chr1 | 28758307 | 28762511 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops1g01252 | 200 | 389 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 26.768 | 7.24e-07 | 50.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops1g01252 | K14837 | - | gmx:100809622 | 644.81 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops1g01252 | 1 | 28758307 | 28762511 | Rops1g01252 | 1 | 28758307 | 28762511 | ECH |