Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01252 ATGGGTAAAAAGAAACCCAAGGAGCCACAACAAACCCCTCAAAGTGACACCGTTTCACCCCCTCACGGCATTTTCAACTCGCTCTTTGGCACCGCGCCGGAACAGAACACCGCCACCGCCGCTTCTCTATTTTCCGATGACAACCCCTTTCGGAGAAAGCTTCAACAACCCGCTCCAGTTTCTGACACAACCAATCACACTCAAAGCCCTATCAATAGCGGCTTTGTGAACAATGATACCGGCGAAGAGAAGAAGAGAAAGAGGAAGAAAGAGAGAAACCCTAATCTCGATTTGGATTCCAAAATAGAAGTTTCGGAGAAAAAAAGGAAACACGGTTCGGATGAAAAAGGAGGGGAAAGGAAAGAACTTGATTTGGGTGCTGAAGGCGAAGAGGGGAAGAAGAAGAAGAGGAAAAGGGATGAGCTTGAGAAAGAGTGGGAGGATAAGAAGTATGGGAAGGTGGAGGGAGGAGAGGAAGGTGAAAAGGAAGGGGTTGGGAATAAAATTGTTGGGAGCAAGAGGAAGGTTCTGGATAATCCAGCTGATCTGTTGGTTTCAAAGGAAGGTTTTGATGATGAGGATAAGCTTTTGAGGACTATCTTTGTTGGGAATTTGCCTCTCAAGGTTAAAAAGAAGACTTTGTTGAAGGAGTTTAAGAAATTTGGTGAGGTTGAATCTGTTAGGATTCGCTCTGTTCCTATACAAGATACCAAAAAACCTAGAAAGGGAGCCATCCTTGCCAAGAAAATAAATGATTCGGGTGATAGTGTTCACGCATACATTGTTTTCAAAACTGAAGAATCTGCTCAGGCTTCTTTGTCACACAACATAACTGTGGTTGAAGGAAATCACATTCGTGTTGATAGGGCATGCCCACCCCGAAAGAAACATAAAGGGGAGAGTGCTTCACTTTATGATAATAAAAGAACTGTTTTTGTCGGCAACCTCCCATTTGATGTGAAGGATGAAGAACTTTATCAATTATTTTGTGGTATTTCCAACCTACAATCAACCATCGAAGCTGTTAGAGTGGTTCGAGATCCTCATCTAAATGTTGGAAAGGGTATTGCCTATGTGCTGTTTAAAACAAGGGAAGCTGCTAATTCTGTTGTTAAGAAACGGAACTTGAAGCTTCGGGATCGAGAGTTAAGACTCAGTCATGCCAAAGCAGATGCTACCCCATCTAAAAGGCCGAACTCATCACCAGCAAAAGCTCCTAGTACCCCTGCAAAGAAGCTGGCTGTGGTGGGTTCAAAATCTCCTTCGAGCAGTAATAACAGGTCAAACAGAAAAATTAATGCATCTTATCAGGGTCTGCGTGCGACCAAATCTGATGTCCACAAGAAAGTTCATGGAGGAGAAAAACTGAAAGAGCGCAACACGAAAAGGCCATCAGTTGCTGCCAGAAAGGCCAAAGCAAAATCGCCCAAGGAGGGTGGTACACCAAAACAAGCAGGGTTGAAACGCAAGCTGGATAGTCGTACTCCAGATAGCTCCCTAAGAAATAACAAAGCCAAAAAGAAGAGGTAG 1530 0.4392 MGKKKPKEPQQTPQSDTVSPPHGIFNSLFGTAPEQNTATAASLFSDDNPFRRKLQQPAPVSDTTNHTQSPINSGFVNNDTGEEKKRKRKKERNPNLDLDSKIEVSEKKRKHGSDEKGGERKELDLGAEGEEGKKKKRKRDELEKEWEDKKYGKVEGGEEGEKEGVGNKIVGSKRKVLDNPADLLVSKEGFDDEDKLLRTIFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDSGDSVHAYIVFKTEESAQASLSHNITVVEGNHIRVDRACPPRKKHKGESASLYDNKRTVFVGNLPFDVKDEELYQLFCGISNLQSTIEAVRVVRDPHLNVGKGIAYVLFKTREAANSVVKKRNLKLRDRELRLSHAKADATPSKRPNSSPAKAPSTPAKKLAVVGSKSPSSSNNRSNRKINASYQGLRATKSDVHKKVHGGEKLKERNTKRPSVAARKAKAKSPKEGGTPKQAGLKRKLDSRTPDSSLRNNKAKKKR* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01252 509 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 288 477 - -
Rops1g01252 509 Gene3D - 297 412 IPR012677 -
Rops1g01252 509 MobiDBLite consensus disorder prediction 57 78 - -
Rops1g01252 509 MobiDBLite consensus disorder prediction 442 502 - -
Rops1g01252 509 MobiDBLite consensus disorder prediction 384 509 - -
Rops1g01252 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 242 IPR000504 GO:0003723
Rops1g01252 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 383 IPR000504 GO:0003723
Rops1g01252 509 Gene3D - 194 296 IPR012677 -
Rops1g01252 509 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 390 IPR000504 GO:0003723
Rops1g01252 509 MobiDBLite consensus disorder prediction 1 147 - -
Rops1g01252 509 MobiDBLite consensus disorder prediction 79 147 - -
Rops1g01252 509 CDD RRM1_RBM34 198 288 - -
Rops1g01252 509 SUPERFAMILY RNA-binding domain, RBD 305 400 IPR035979 GO:0003676
Rops1g01252 509 MobiDBLite consensus disorder prediction 11 44 - -
Rops1g01252 509 MobiDBLite consensus disorder prediction 417 440 - -
Rops1g01252 509 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 292 IPR000504 GO:0003723
Rops1g01252 509 CDD RRM2_RBM34 310 386 IPR034221 -
Rops1g01252 509 SUPERFAMILY RNA-binding domain, RBD 191 298 IPR035979 GO:0003676
Rops1g01252 509 SMART rrm1_1 199 288 IPR000504 GO:0003723
Rops1g01252 509 SMART rrm1_1 310 386 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01252 Rops-Chr1 28758307 28762511 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01252 200 389 Eukaryotic Initiation Factors Gene Family AT1G22760 26.768 7.24e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01252 K14837 - gmx:100809622 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01252 1 28758307 28762511 Rops1g01252 1 28758307 28762511 ECH