Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01250 ATGGCACCTTCATTTGACATAAGTTCCCATACAGTTTGTGTCATGGATGCTTCGGGCCAGTTGGGCTTTAGTCTTGTCCAGAGACTCCTTCAAAGGGGTTACACCGTTCATGCCTCCACTCAGAAACGTGGGGAAGAAGAGTTGTTTAATGGGATTTCTGCTGATCCTAATAAGCTCAAGATTTTTCGATCAGACCCATTTGATTATCATAGCATAACTGATGCTCTCAAAGGCTGCTCTGGCTTGTTCTACAGTTTTGAACCTCCCGTTGACCAACCCAGTTATGATGAATACATGGCAGACGAGGAGGTAAGAGCAGCACACAACGTGCTCGAAGCATGTGCTCAGACAGAAACAATGGATAAAGTGGTTTTCACTTCCTCAGCAACCGCAACAGTTTGGAGGGAGGATCGTAAAACCATGGAACTTGATCTAGATGAGAGACATTGGAGTGATGTTAATTTCTGTCGCAAATTCAAGTTATGGCATGGGATGTCAAAAACACTGGCTGAAAAGACAGCGTGGGCCTTGGCAATGGACAGAGGAGTGAATATGGTGTCAATCAACTCAGGCTTGTTAATGGCTCATGATCTCTCCATCAAGAACCCTTACTTAAGAGGAGCTGCTGAAATGTACGAAGATGGGGTGTTTGTGACCGTTGATTTAGGATTCTTGGTGGATGCCCACATCTGTGTCTACGAGGATCTTTCATCCTACGGTCGTTATTTGTGCTTCAATCACATCATCAACACCCATGACGACGCCGTTCAGCTCGCTCGCAAGTTGACACCTGCTGCTCCTTCCTTACCTCCAAGCGGTGACTATGGAAGGAGTTTCATTGAACAGAGAATAAGCAACAAAAAGTTGAACAAATTGATGGTGGACTTTGAGACTTGA 897 0.4515 MAPSFDISSHTVCVMDASGQLGFSLVQRLLQRGYTVHASTQKRGEEELFNGISADPNKLKIFRSDPFDYHSITDALKGCSGLFYSFEPPVDQPSYDEYMADEEVRAAHNVLEACAQTETMDKVVFTSSATATVWREDRKTMELDLDERHWSDVNFCRKFKLWHGMSKTLAEKTAWALAMDRGVNMVSINSGLLMAHDLSIKNPYLRGAAEMYEDGVFVTVDLGFLVDAHICVYEDLSSYGRYLCFNHIINTHDDAVQLARKLTPAAPSLPPSGDYGRSFIEQRISNKKLNKLMVDFET* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01250 298 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 10 292 - -
Rops1g01250 298 Pfam NAD(P)H-binding 17 133 IPR016040 -
Rops1g01250 298 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 273 IPR036291 -
Rops1g01250 298 Gene3D - 4 298 - -
Rops1g01250 298 FunFam Cinnamoyl-CoA reductase-like SNL6 isoform A 4 298 - -
Rops1g01250 298 CDD FR_SDR_e 12 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01250 Rops-Chr1 28677188 28679878 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01250 11 296 Monolignol Biosynthesis Gene Families AT5G58490 32.787 1.31e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01250 - - gmx:100793329 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01250 1 28677188 28679878 Rops1g01250 1 28677188 28679878 ECH