Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01249 ATGCCATCTCGTGAAGCAATAACCAATGCTATGTCTTCTTCATCAAAAGCAGAAAATTCTGAAACCCCACAACCAGCAACAGCATATAACAATAGCATCCCACCAGAGCTTATATCCGTTACCCTTACCATGGTTGTGGTGTGTTTTGCAGCCTCAGGAACCCTCGTTCGTCGTTCACCCAATGCATCTCCTTATAGAGGCCTCGACCCTTCTCTTCTTCAAACCTTCCCAACCTTTCTCTATGCCAAAGTGAAGGACCTTCGCAAGGAGAAGAATCATAGCCTAGAATGTGCCATTTGTTTGCTTGAGTTTGAAGAAGATAGCATGCTGCGTCTTTTGACCATTTGTTGCCATGTTTTCCATCAAGAATGCATAGACTTATGGCTTCGTTCTCACTCGACATGCCCAGTTTGTCGTATGGATCTTAATTCACAAACCAATGAAACGCCAAAATCTGATGAACCCTGCGAGGAGGATAATGACAATGTTGGTGTGGAAGAAGAGAGAAGGGGCGGTGACGTTTGCATTGAGGTAAAAGAAGGTGAAAGTGATCATAGACATGATGATGATGATGATGAGGGAGTTTCAATGAGCATGCAACATGGAGAACAACACAAGTTTGCACGGCCACATTCAACGGGGCATTCAATAGTTATGATTAGAGGAGGAGATGAAGGAAGGGATTATGATGATAAATATAGGTTGAGATTGCAGGAGCATGTAGCGTTAAAATTTGTAAGAGGAAGGCACAACTTCACAAAGAGTTGTTCAAGTTACAAGGATATGAATGGATAG 795 0.4277 MPSREAITNAMSSSSKAENSETPQPATAYNNSIPPELISVTLTMVVVCFAASGTLVRRSPNASPYRGLDPSLLQTFPTFLYAKVKDLRKEKNHSLECAICLLEFEEDSMLRLLTICCHVFHQECIDLWLRSHSTCPVCRMDLNSQTNETPKSDEPCEEDNDNVGVEEERRGGDVCIEVKEGESDHRHDDDDDEGVSMSMQHGEQHKFARPHSTGHSIVMIRGGDEGRDYDDKYRLRLQEHVALKFVRGRHNFTKSCSSYKDMNG* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01249 264 MobiDBLite consensus disorder prediction 151 210 - -
Rops1g01249 264 CDD RING-H2_EL5-like 96 139 - -
Rops1g01249 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 145 IPR013083 -
Rops1g01249 264 FunFam E3 ubiquitin-protein ligase ATL6 56 145 - -
Rops1g01249 264 Pfam Ring finger domain 96 139 IPR001841 -
Rops1g01249 264 SMART ring_2 97 138 IPR001841 -
Rops1g01249 264 MobiDBLite consensus disorder prediction 1 28 - -
Rops1g01249 264 SUPERFAMILY RING/U-box 83 149 - -
Rops1g01249 264 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Rops1g01249 264 PANTHER RING FINGER DOMAIN-CONTAINING 28 142 - -
Rops1g01249 264 MobiDBLite consensus disorder prediction 145 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01249 Rops-Chr1 28647825 28648690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01249 51 247 Rapid Response to Elicitors AT3G05200 40.299 1.13e-32 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01249 - - ccaj:109800443 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01249 1 28647825 28648690 Rops2g02844 2 49562738 49563688 PCT