Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01248 ATGGCTTTGGAAACTCTACCATCTAATGATTTTTCCAATTTCATTATCTATGACACTATCTCTGCAACTCCATTTAGCAGCCATGACACTTCAGATACTTGTTTGTTATTAGAAGAAAATAGAGTGAAATATCATGAACATGACCATGCATTTGATAACTATGCATTGGTGACACGAAAACGCCAATCTGGTGAACCAGAAGCCATTGATCAGAGGCAGAATTTTGCTGAACAAGGGAGAAAGAAGAAGAGAAGAAAGACAAGGATTTGCAAAAACAAGGAAGAGGCTGAGACTCAAAGAATGACCCACATTACTGTAGAAAGGAACCGCCGGAAGCAAATGAATGAGCATCTTGCTGTTCTGCGTTCACTCATGCCTGAATCCTATGTCCAAAGGGGTGACCAGGCCTCTATAGTGGGTGGTGCTATAGAATTTGTGAAGGAGCTGGAGCACCTCATGCAGTCCCTTGAAGCTAAAAAGTTTCAGCTTTTACATCAAGGAGTGGCAGAAGCCAGTGAAGATACTGCCATTTCCAAATTCACAAGACCCCCTTTTGCCCATTTTTTTGTGTATCCTCAGTACACGTGGTCCCAGGCTCCTAACAAATACACAACTCAAACCAAGGCAGCCATAGCTGATATTGAAGTTACTTTGATTGAGACTCATGCCAACCTTAGAATTCTCTCACGGAGAAGCCCCAGGCAGCTATCAAAGCTGATTGCTGGTTTTCAAACACTGTATCTCACCATCTTACATCTCAATGTCACCACCATGGACCCCTTGGTACTCTATTCTATCAGTGCCAAGGTTGAAGAAGGATGCCAACTTAGTTCGGTAGATGACATTGCAACGGCAGTTCACCGATTGCTTAAAATGATTGATGAGGAGGCTTCCCTTTGCTGTTAA 906 0.4283 MALETLPSNDFSNFIIYDTISATPFSSHDTSDTCLLLEENRVKYHEHDHAFDNYALVTRKRQSGEPEAIDQRQNFAEQGRKKKRRKTRICKNKEEAETQRMTHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLMQSLEAKKFQLLHQGVAEASEDTAISKFTRPPFAHFFVYPQYTWSQAPNKYTTQTKAAIADIEVTLIETHANLRILSRRSPRQLSKLIAGFQTLYLTILHLNVTTMDPLVLYSISAKVEEGCQLSSVDDIATAVHRLLKMIDEEASLCC* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01248 301 CDD bHLH_AtFAMA_like 101 160 - -
Rops1g01248 301 SMART finulus 104 155 IPR011598 GO:0046983
Rops1g01248 301 Pfam Helix-loop-helix DNA-binding domain 99 150 IPR011598 GO:0046983
Rops1g01248 301 PANTHER MAX DIMERIZATION, MAD 45 297 - -
Rops1g01248 301 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 149 IPR011598 GO:0046983
Rops1g01248 301 Coils Coil 146 166 - -
Rops1g01248 301 Gene3D - 90 166 IPR036638 GO:0046983
Rops1g01248 301 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 97 166 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01248 Rops-Chr1 28637848 28639458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01248 90 270 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 56.316 2.23e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops1g01248 HLH 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01248 - - pvu:PHAVU_003G284500g 449.129