Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01247 ATGGGTTCTCTTGGCAACCCAAAAACTTGGGTTCCAATTGTGAACAACAAAGATTGTTCTCAAGGATTTTGTAGCTTCTATTGTCCACAGTGGTGTTATGTAGTCTATCCTCCTCCTCCTCCTTCTCCCTTTGAATTTCCTGATGATGATTCAAGTCCAAATTTCTCCCCTCTAGTTATTGCAATCATTGGAATCTTGGCCAGTGCTTTTCTTCTTGTGAGTTACTATACCTTAATATCCAAGTACTGTGGCCACAGAGAATCTTCAGGAAGCGAAAACCATGGGGCAAATGTTGAATTGGAAGACAATCACAACCCTTCACTCCATGAGCCGTGGCAAGTTTCAACCACTGGCTTAGATGAGGCTTTGATCAAGTCCATAACAGTTTGCAAGTACAAGAAAGATGATGGTTTGGTTGAGGTAACCGATTGTTCCGTTTGTCTCAGTGAGTTTCAAGAAGATGAAAATATTAGACTCTTGCCAAAGTGCAGCCATGCTTTTCATCTTCCTTGCATTGATACATGGCTCAAATCTCACTCCAATTGCCCTCTATGTCGTGCCAGCATATTTACCTTCAATGCTTCAGCACCTTGTGTGCCAAACCCAGCTATAGAACTCCCTACAAGGAACAATACTTTTTCAGAAGATCAACATGCAGATGAAAATGTAGCTGTTGTAAGAGACAGTGAATTGGGTGTAGTTGAAGAAGAAAACATGCATGGTAGAGCAGTTCCGAAGACTTTATGGCGTGCTTTTAGTGATTTATGCAATTTGAGGGGAAGGCATAGTACAATTGAGATTAGAGATGAAGATTTTGAATCCATTCCAAGGTCAATTTCTATGGATCATTCATTTCAAAGTGGTCTTTCAGTTGCTGATGTTTTGCATATGAATCATGAGCAAGATTCCCAAGTAGAAGGATGTTCCAATGGAGCTAGTACATCAAAGAGATCAAGAGGTGAAAGTAGCAAGTCTAGCTATAGAAGAAGGGTTTTGCATTGTGTTTTGAGTCCAATTTCAATGAAGAGATCATTTTCCAGTGGAAGATTCTCTCTTAGCAGCAATGGCAGAGGAAGGCATGGGGTTTTACCTTTGTGA 1098 0.4062 MGSLGNPKTWVPIVNNKDCSQGFCSFYCPQWCYVVYPPPPPSPFEFPDDDSSPNFSPLVIAIIGILASAFLLVSYYTLISKYCGHRESSGSENHGANVELEDNHNPSLHEPWQVSTTGLDEALIKSITVCKYKKDDGLVEVTDCSVCLSEFQEDENIRLLPKCSHAFHLPCIDTWLKSHSNCPLCRASIFTFNASAPCVPNPAIELPTRNNTFSEDQHADENVAVVRDSELGVVEEENMHGRAVPKTLWRAFSDLCNLRGRHSTIEIRDEDFESIPRSISMDHSFQSGLSVADVLHMNHEQDSQVEGCSNGASTSKRSRGESSKSSYRRRVLHCVLSPISMKRSFSSGRFSLSSNGRGRHGVLPL* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01247 365 SUPERFAMILY RING/U-box 124 192 - -
Rops1g01247 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 193 IPR013083 -
Rops1g01247 365 MobiDBLite consensus disorder prediction 301 326 - -
Rops1g01247 365 PANTHER RING-H2 FINGER PROTEIN ATL16 43 328 IPR044600 GO:0016567|GO:0016740
Rops1g01247 365 MobiDBLite consensus disorder prediction 302 320 - -
Rops1g01247 365 FunFam RING-H2 finger protein ATL54 119 192 - -
Rops1g01247 365 CDD RING-H2_EL5-like 143 186 - -
Rops1g01247 365 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Rops1g01247 365 SMART ring_2 144 185 IPR001841 -
Rops1g01247 365 Pfam Ring finger domain 143 186 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01247 Rops-Chr1 28627812 28629520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01247 1 246 C3H Transcription Factor Family AT3G03550 50.936 8.08e-73 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01247 - - gmx:100792267 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01247 1 28627812 28629520 Rops1g01247 1 28627812 28629520 ECH
Rops1g01247 1 28627812 28629520 Rops2g02847 2 49584409 49586363 PCT