Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops1g01247 | ATGGGTTCTCTTGGCAACCCAAAAACTTGGGTTCCAATTGTGAACAACAAAGATTGTTCTCAAGGATTTTGTAGCTTCTATTGTCCACAGTGGTGTTATGTAGTCTATCCTCCTCCTCCTCCTTCTCCCTTTGAATTTCCTGATGATGATTCAAGTCCAAATTTCTCCCCTCTAGTTATTGCAATCATTGGAATCTTGGCCAGTGCTTTTCTTCTTGTGAGTTACTATACCTTAATATCCAAGTACTGTGGCCACAGAGAATCTTCAGGAAGCGAAAACCATGGGGCAAATGTTGAATTGGAAGACAATCACAACCCTTCACTCCATGAGCCGTGGCAAGTTTCAACCACTGGCTTAGATGAGGCTTTGATCAAGTCCATAACAGTTTGCAAGTACAAGAAAGATGATGGTTTGGTTGAGGTAACCGATTGTTCCGTTTGTCTCAGTGAGTTTCAAGAAGATGAAAATATTAGACTCTTGCCAAAGTGCAGCCATGCTTTTCATCTTCCTTGCATTGATACATGGCTCAAATCTCACTCCAATTGCCCTCTATGTCGTGCCAGCATATTTACCTTCAATGCTTCAGCACCTTGTGTGCCAAACCCAGCTATAGAACTCCCTACAAGGAACAATACTTTTTCAGAAGATCAACATGCAGATGAAAATGTAGCTGTTGTAAGAGACAGTGAATTGGGTGTAGTTGAAGAAGAAAACATGCATGGTAGAGCAGTTCCGAAGACTTTATGGCGTGCTTTTAGTGATTTATGCAATTTGAGGGGAAGGCATAGTACAATTGAGATTAGAGATGAAGATTTTGAATCCATTCCAAGGTCAATTTCTATGGATCATTCATTTCAAAGTGGTCTTTCAGTTGCTGATGTTTTGCATATGAATCATGAGCAAGATTCCCAAGTAGAAGGATGTTCCAATGGAGCTAGTACATCAAAGAGATCAAGAGGTGAAAGTAGCAAGTCTAGCTATAGAAGAAGGGTTTTGCATTGTGTTTTGAGTCCAATTTCAATGAAGAGATCATTTTCCAGTGGAAGATTCTCTCTTAGCAGCAATGGCAGAGGAAGGCATGGGGTTTTACCTTTGTGA | 1098 | 0.4062 | MGSLGNPKTWVPIVNNKDCSQGFCSFYCPQWCYVVYPPPPPSPFEFPDDDSSPNFSPLVIAIIGILASAFLLVSYYTLISKYCGHRESSGSENHGANVELEDNHNPSLHEPWQVSTTGLDEALIKSITVCKYKKDDGLVEVTDCSVCLSEFQEDENIRLLPKCSHAFHLPCIDTWLKSHSNCPLCRASIFTFNASAPCVPNPAIELPTRNNTFSEDQHADENVAVVRDSELGVVEEENMHGRAVPKTLWRAFSDLCNLRGRHSTIEIRDEDFESIPRSISMDHSFQSGLSVADVLHMNHEQDSQVEGCSNGASTSKRSRGESSKSSYRRRVLHCVLSPISMKRSFSSGRFSLSSNGRGRHGVLPL* | 366 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops1g01247 | 365 | SUPERFAMILY | RING/U-box | 124 | 192 | - | - | |
Rops1g01247 | 365 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 193 | IPR013083 | - | |
Rops1g01247 | 365 | MobiDBLite | consensus disorder prediction | 301 | 326 | - | - | |
Rops1g01247 | 365 | PANTHER | RING-H2 FINGER PROTEIN ATL16 | 43 | 328 | IPR044600 | GO:0016567|GO:0016740 | |
Rops1g01247 | 365 | MobiDBLite | consensus disorder prediction | 302 | 320 | - | - | |
Rops1g01247 | 365 | FunFam | RING-H2 finger protein ATL54 | 119 | 192 | - | - | |
Rops1g01247 | 365 | CDD | RING-H2_EL5-like | 143 | 186 | - | - | |
Rops1g01247 | 365 | ProSiteProfiles | Zinc finger RING-type profile. | 144 | 186 | IPR001841 | - | |
Rops1g01247 | 365 | SMART | ring_2 | 144 | 185 | IPR001841 | - | |
Rops1g01247 | 365 | Pfam | Ring finger domain | 143 | 186 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops1g01247 | Rops-Chr1 | 28627812 | 28629520 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops1g01247 | 1 | 246 | C3H Transcription Factor Family | AT3G03550 | 50.936 | 8.08e-73 | 229 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops1g01247 | - | - | gmx:100792267 | 531.176 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops1g01247 | 1 | 28627812 | 28629520 | Rops1g01247 | 1 | 28627812 | 28629520 | ECH | |
Rops1g01247 | 1 | 28627812 | 28629520 | Rops2g02847 | 2 | 49584409 | 49586363 | PCT |