Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01246 ATGGCAACTTTAGAATCAGCTATTACTGTATTCGCACCTCAACGTTTTTCCTATAACTATCGTTTCCTTGCAAAAGCACCAGAATCTGTAAAACTTTATGCTGCTACGACCTCTCTCTCTTCCCTTTCTTCTCAATATCACAACCTTCTCTTCCTTTCCAAGGCATCCTCGAAAACCATACGACTCTGTTTTGAGTTATGCTCTGCTTTGCAAGAGGTAGCAGCAGCAACAACCACAGAGGAAAACCAGACTGCAAACAACATTAAGAAGAAGCTCTACGTGTTCAACTTGCCTTGGTCTCTGTCGGCGGAAGACATCGGAGACCTCTTTGGACAATGTGGAACTGTAACCGACGTCGAGATAGTAAAGAACAAAGATGGGAGGGGCAGAGGCTTTGCCTTCGTTACTATGGCTTCCGGGGAAGAGGCTCAGGCTGCTATCGATAAATTTGACTCTCATGAAATATCGGGACGGATAATAAGGGTAGAGCTTGCAAAGAGATTCAAGAAACCTCCTCCTCCACGTCCTCCAAGTCTCCCTCCTAGTGAGACACGTCATGTAATTTATGCATCCAACCTAGCATGGAAAGCAAGATCTAACCATCTCAGAGATCTCTTCACCGAGAATTTCAAAACACCTGTTTCAGCCAGGGTTGTCTTTGAAAGCTCTGGTGGAAGATCTGCTGGGTATGGATTTGTTTCATATCTTACACAGGAGGAAGCAGAGGCTGCCATTTCTGCTTTGGATGGGAAGGAGTTAATGGGACGACCACTTCGCCTAAAAATCAGTGAAAAGAAAGTTAAAGAAGCTGGAAGTAAAAAAGATGAAGGCCAAGGTGATGATGCTCAACCGGAAGAATCATAA 864 0.4444 MATLESAITVFAPQRFSYNYRFLAKAPESVKLYAATTSLSSLSSQYHNLLFLSKASSKTIRLCFELCSALQEVAAATTTEENQTANNIKKKLYVFNLPWSLSAEDIGDLFGQCGTVTDVEIVKNKDGRGRGFAFVTMASGEEAQAAIDKFDSHEISGRIIRVELAKRFKKPPPPRPPSLPPSETRHVIYASNLAWKARSNHLRDLFTENFKTPVSARVVFESSGGRSAGYGFVSYLTQEEAEAAISALDGKELMGRPLRLKISEKKVKEAGSKKDEGQGDDAQPEES* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01246 287 SUPERFAMILY RNA-binding domain, RBD 89 178 IPR035979 GO:0003676
Rops1g01246 287 Gene3D - 178 286 IPR012677 -
Rops1g01246 287 Gene3D - 69 177 IPR012677 -
Rops1g01246 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 265 IPR000504 GO:0003723
Rops1g01246 287 MobiDBLite consensus disorder prediction 264 280 - -
Rops1g01246 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 160 IPR000504 GO:0003723
Rops1g01246 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 259 IPR000504 GO:0003723
Rops1g01246 287 SUPERFAMILY RNA-binding domain, RBD 171 269 IPR035979 GO:0003676
Rops1g01246 287 MobiDBLite consensus disorder prediction 264 287 - -
Rops1g01246 287 PANTHER OS02G0815200 PROTEIN 42 266 - -
Rops1g01246 287 SMART rrm1_1 91 163 IPR000504 GO:0003723
Rops1g01246 287 SMART rrm1_1 187 261 IPR000504 GO:0003723
Rops1g01246 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 167 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01246 Rops-Chr1 28620474 28624767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01246 80 266 Eukaryotic Initiation Factors Gene Family AT4G34110 29.146 3.63e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01246 - - gmx:100793319 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01246 1 28620474 28624767 Rops1g01246 1 28620474 28624767 ECH