Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01242 ATGGCAATTGAAAACCAAGACACTGCTGTCAGGGAAATTAAGCCCAAGAACAGAAGGATCATGGGTGCTGGAGGACCTGATGATGATGACAACAGGTGGCCACCATGGTTGAAGCCTCTGCTTAAAGAGAGCTTCTTTGTTCAATGCAAGTTACATGCTGATTCTCACAAGAGTGAATGTAACATGTATTGTTTGGACTGTATGAATGGACCTCTTTGTTCTCTCTGCCTCGCTTACCACAAGGATCATCGTGCCATTCAGATTAGGAGGTCCTCATACCATGACGTGATCAGGGTCTCTGAGATTCAGAAGGTGTTGGACATCACTGGTGTCCAAACCTACATTATCAACAGTGCAAGGGTTGTGTTCTTGAATGAGAGGCCTCAACCTAGGCCTGGGAAAGGTGTCACAAACACTTGTGAAGTCTGTGAGCGTAGCCTTCTTGATTCTTACCGGTTCTGTTCTCTGGGATGCAAGGTTGTAGGAACATCCAAGAATTTCCAGAAGAACAAGAAACAATCAGCGGCAATGGCATCAGATTCTGAGGATTCATACAGTAGCAACAGCATCCATGGCCGTCAGAAGAACAGCAAAGTTCAGAGCTTTACACCATCTACACCACCCCCAAGTTCAGTTAATTACAGAACAGCCAAGAGAAGAAAGGGAATTCCACACCGAGCCCCAATGGGGGGACTAATCATTGAATACTAG 711 0.4571 MAIENQDTAVREIKPKNRRIMGAGGPDDDDNRWPPWLKPLLKESFFVQCKLHADSHKSECNMYCLDCMNGPLCSLCLAYHKDHRAIQIRRSSYHDVIRVSEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSYRFCSLGCKVVGTSKNFQKNKKQSAAMASDSEDSYSSNSIHGRQKNSKVQSFTPSTPPPSSVNYRTAKRRKGIPHRAPMGGLIIEY* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01242 236 CDD Bbox2 49 88 - -
Rops1g01242 236 Pfam PLATZ transcription factor 89 160 IPR006734 -
Rops1g01242 236 MobiDBLite consensus disorder prediction 169 213 - -
Rops1g01242 236 MobiDBLite consensus disorder prediction 169 230 - -
Rops1g01242 236 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 28 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01242 Rops-Chr1 28568831 28571020 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Rops1g01242 PLATZ 5.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01242 - - gmx:100797900 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01242 1 28568831 28571020 Rops1g01242 1 28568831 28571020 ECH
Rops1g01242 1 28568831 28571020 Rops2g02849 2 49691048 49693333 PCT