Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01234 ATGAATCTGTGGAGCGACGATAATTCTTCTGTGATGGAGGCCTTCATGACATCCTCCGCAGATTTATCCTCCATATGGCCACCGCCGCCGCCGCAATCCGGCGGGGTTTTCAACCAGGACACCCTCCAGCAACGACTCCAGGCACTCATCGAAGGTGCTAGAGAGAGTTGGACCTACGCAATTTTCTGGCAACCCTCACATGACTATTCCGGCGCCTCCCTCCTCGGTTGGGGTGACGGTTACTACAAAGGCGACGAAGACAAAGCCAAAGCCAAAGCCAAAGCTAAGGCCAAATCCATCTCCTCCGCCGCCGAACAAGAGACCCGGAAAAAGGTCCTCCGTGAGCTCAATTCCCTCATCTCCGGTTCCTCCGCCCCACCCCCTGAAGACACCGTCGACGAAGAAGTCACCGACACCGAGTGGTTCTTCCTCGTTTCCATGACCCAATCCTTCGTCAACGACGGCGGGTTGCCGGGGCAAGCGTACTTCAACTCCATCCCCGTTTGGGTCGCCGGCGCCGACCATCTCTCCGCCTCGCCGTGCGAGAGAGCCAGGCAGGGACAAACTTTCGGCCTGCAAACCTTGGTGTGTGTGCCGTCGGCGAGTGGGGTGGTGGAGTTAGGTTCCACAGAGCTGATTTACCAGAATCCCGATCTGATGAACAAGGTTAAGGTGCTATTCAATTTCAACAATAATCCTGATTTGTGTTCTTCTTGGCCCTTGAGTTCTACCACCACCACCACCACCGATCAAGGTGAAAACGACCCTTCTTCTCTTTGGCTCAACGACCCTGACGGCAGAGATTCTGTTAATGTTTCCGTTTCAGTTCCTACCATTCACACCCACAACAATAACAATCAGGGTATCAAAACTTTGCAGTTTGAAACTGCAACCCCTGGTTCAAGTACCTTAACGGAAACCCCAAGTGCCGTTAACGTCCCTCACGCGCCGTCGCAGAATCAGAGCTTTTTCTCAAGGGAAATGATATTATCGGAATATGGGTTTGATACCAAGAACGGGAGCAACCACCATCTGAAGCCGGAATCCGGTGAGATTCTGAGCTTCGGCGGCGAGAGTAAGAGGAGCTCTTATGGAGCTAACGGGAATTCCCATTTCTTCTCAGGCCAGTCGCAGTTTGTCGCTGCCGGCGAGGAGATTAACAATAACGGCAAGAGGAAGTCACCGAATTCGAGAGGCAGCAACGATGACGGAATGCTTTCGTTCTCCTCCGCCGTGATTATTCCGGCGTCGAATTTGAAGTCCTCCGCCGGCGCAGGCGATTCGGACCATTCGGATCTGGAAGCTTCGGTGGTGAAGGAGGCTGATAGCAGCAGGGTGGTGGAACCGGAAAAGAAACCCCGGAAAAGGGGGAGAAAGCCGGCGAACGGTAGAGAAGAACCGTTGAACCATGTTGAAGCAGAGAGACAGAGGAGAGAGAAGCTTAACCAGAGGTTCTACGCGCTTCGTGCGGTGGTTCCAAACGTTTCAAAGATGGACAAAGCTTCGCTTTTGGGAGACGCTATATCTTACATTACGGAGCTGAAATCAAAGCTTCAGAAACTCGAATCAGATAAAGATGGGTTGGAGAAGCAACTTGATTCAGTGAAGAAGGAACTCGAGAAAACATCCACTGAACACTCTTCATCACCTCCTCCTCCTCCTCCTCCTCCTTCTAATAAGTCCTCTAATCAAGCTTTAATCGATTTGGATATTGACGTTAAAATTATAGGTTGGGATGCAATGATAAGGATCCAATGCAGCAACAAGAACCACCCTGCAGCAAGGTTAATGGCGGCGTTGATGGAGCTAGACCTTGATGTTCACCACGCCAGCGTGTCAGTGGTGAATGATTTGATGATCCAACAAGCAACTGTGAAAATGGGTAGTCGATTTTACACGCAGGAGCAGCTTCGATCAGCACTCTCTTCCAAAGTTGGGGATGCACGGTAG 1950 0.5149 MNLWSDDNSSVMEAFMTSSADLSSIWPPPPPQSGGVFNQDTLQQRLQALIEGARESWTYAIFWQPSHDYSGASLLGWGDGYYKGDEDKAKAKAKAKAKSISSAAEQETRKKVLRELNSLISGSSAPPPEDTVDEEVTDTEWFFLVSMTQSFVNDGGLPGQAYFNSIPVWVAGADHLSASPCERARQGQTFGLQTLVCVPSASGVVELGSTELIYQNPDLMNKVKVLFNFNNNPDLCSSWPLSSTTTTTTDQGENDPSSLWLNDPDGRDSVNVSVSVPTIHTHNNNNQGIKTLQFETATPGSSTLTETPSAVNVPHAPSQNQSFFSREMILSEYGFDTKNGSNHHLKPESGEILSFGGESKRSSYGANGNSHFFSGQSQFVAAGEEINNNGKRKSPNSRGSNDDGMLSFSSAVIIPASNLKSSAGAGDSDHSDLEASVVKEADSSRVVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQKLESDKDGLEKQLDSVKKELEKTSTEHSSSPPPPPPPPSNKSSNQALIDLDIDVKIIGWDAMIRIQCSNKNHPAARLMAALMELDLDVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRSALSSKVGDAR* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01234 649 Gene3D - 457 545 IPR036638 GO:0046983
Rops1g01234 649 MobiDBLite consensus disorder prediction 538 563 - -
Rops1g01234 649 MobiDBLite consensus disorder prediction 242 258 - -
Rops1g01234 649 SMART finulus 471 520 IPR011598 GO:0046983
Rops1g01234 649 MobiDBLite consensus disorder prediction 387 406 - -
Rops1g01234 649 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 465 514 IPR011598 GO:0046983
Rops1g01234 649 MobiDBLite consensus disorder prediction 242 266 - -
Rops1g01234 649 Pfam Helix-loop-helix DNA-binding domain 469 514 IPR011598 GO:0046983
Rops1g01234 649 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 42 227 IPR025610 -
Rops1g01234 649 MobiDBLite consensus disorder prediction 420 475 - -
Rops1g01234 649 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 468 534 IPR036638 GO:0046983
Rops1g01234 649 MobiDBLite consensus disorder prediction 432 475 - -
Rops1g01234 649 CDD bHLH_AtAIB_like 462 538 - -
Rops1g01234 649 PANTHER MYC 12 644 IPR045084 GO:0003700|GO:0006355
Rops1g01234 649 Coils Coil 511 545 - -
Rops1g01234 649 FunFam Transcription factor bHLH13 458 532 - -
Rops1g01234 649 MobiDBLite consensus disorder prediction 298 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01234 Rops-Chr1 28347209 28349615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01234 1 646 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 55.193 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops1g01234 bHLH-MYC_N 9e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01234 K13422 - gmx:100776289 873.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01234 1 28347209 28349615 Rops1g01234 1 28347209 28349615 ECH