Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01232 ATGGGAGATGTAGCTAAGGACCTTACAGCTGGGACTATTGGAGGGGCTGCACAATTGATAGTTGGACACCCATTTGACACCATCAAGGTTAAGCTCCAAAGCCAGCCTACACCATTGCCTGGCCAACTTCCCAAGTATTCTGGTGCAATTGATGCTGTCAAGAAAACGATAGCAGCCGAAGGCTCAAGGGGTTTATACAAAGGTATGGGAGCCCCACTTGCTACAGTAGCTGCCTTCAATGCTGTCCTATTTACAGTTAGGGGACAAATGGAGGCATTATTGAGGTCCCATCCTGGTGCTTCCCTCACAGTCCAACAGCAGGTTGTTTGTGGAGCTGGAGCTGGAGTTGCAGTTTCCTTTCTAGCTTGCCCCACTGAATTGATCAAATGCAGGTTGCAAGCACAAAGTGCTCTAGCTGGTTCTGGAACAGCTGCAGTAGCAGTGAAATATGGGGGACCCATGGATGTGGCCAGGCAGGTTCTCAAGTCAGAAGGGGGCATAAAAGGTCTTTTCAAGGGCTTGGTTCCCACTATGGCACGTGAAGTACCTGGAAATGCTGTAATGTTTGGTGTATACGAAGCATCAAAGCAATTACTTGCAGGAGGCTCTGATACCTCTGGACTAGGTAGAGGTTCTCTCATAGTTGCTGGAGGCTTGGCTGGAGCTTCCTTCTGGTCAATGGTTTACCCAACTGATGTTATTAAGAGTGTGATTCAAGTAGATGATTACAAAAATCCAAAATTTTCTGGTTCAATTGATGCTTTCAGAAGAATTCAAGCTTCTGAGGGGTTCAAAGGCCTTTATAAAGGTTTTGGTCCTGCAATGGCCCGAAGTGTTCCTGCGAATGCAGCATGCTTCTTGGCATATGAGATGACAAAATCAGCTCTGGGATGA 894 0.4698 MGDVAKDLTAGTIGGAAQLIVGHPFDTIKVKLQSQPTPLPGQLPKYSGAIDAVKKTIAAEGSRGLYKGMGAPLATVAAFNAVLFTVRGQMEALLRSHPGASLTVQQQVVCGAGAGVAVSFLACPTELIKCRLQAQSALAGSGTAAVAVKYGGPMDVARQVLKSEGGIKGLFKGLVPTMAREVPGNAVMFGVYEASKQLLAGGSDTSGLGRGSLIVAGGLAGASFWSMVYPTDVIKSVIQVDDYKNPKFSGSIDAFRRIQASEGFKGLYKGFGPAMARSVPANAACFLAYEMTKSALG* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01232 297 FunFam mitochondrial carnitine/acylcarnitine carrier-like protein 2 296 - -
Rops1g01232 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 102 198 IPR018108 -
Rops1g01232 297 SUPERFAMILY Mitochondrial carrier 3 290 IPR023395 -
Rops1g01232 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 208 295 IPR018108 -
Rops1g01232 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 2 93 IPR018108 -
Rops1g01232 297 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 4 295 - -
Rops1g01232 297 Gene3D Mitochondrial carrier domain 2 296 IPR023395 -
Rops1g01232 297 Pfam Mitochondrial carrier protein 4 95 IPR018108 -
Rops1g01232 297 Pfam Mitochondrial carrier protein 214 296 IPR018108 -
Rops1g01232 297 Pfam Mitochondrial carrier protein 102 200 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01232 Rops-Chr1 28292816 28296861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01232 22 296 Antiporters AT1G79900 31.915 7.68e-39 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01232 K15109 - gmx:100781634 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01232 1 28292816 28296861 Rops1g01232 1 28292816 28296861 ECH