Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01224 ATGAGCCAAGGATCTGATACTGTGCATAAGACAGAACATGGTGCCATGATCATTTCTGCAGTAATCATTCATGGCCTTAAGCTTCTCTCTCTCTCTGCTTCACTTTCTCTCTCTTCTGTGCTTCACTTTCTCGGTTTTGCTCTTTTCTGTAAAGAAGTTCCTCAAACAAAAACTCGGTTTTCTTCTGTGTCCGATCTACCAAAGCTTGCTTCCTTAGTTTGTTTGTGTATTTGGAGTGTGATGTCTCCGCCGACGGTGGTTACGGAGGAGGAAGGGACGGTAGCTTCTGCTTCTTCACAATCCTTAGACCGTTGCTCTCAGAACGGTGCTGGATTGAAAGAACGGAATTACCTAGGATTATCAGATTGTTCATCTGTGGACAGTTGTGCTTCTACTGTCCCTAACTTGTGTGATAATGAGAAAAAGGGGAACTTGAATTTGAAGGCTACAGAGTTGAGGCTGGGTCTACCTGGATCCCAATCACCCGAAAGGGATTCTGATCTTTACTCTTTGAGCTCAACAAAGCTTGATGAGAAGCCGCTGTTCCCTTTGATTCCTACTAAAGATGGAATCTGCTCGTCGCAGAAAGCTGTGGGTTCGGGCAACAAAAGAGGTTTTGCTGATATCATGGAGGGGTTTTCTCAGGGCAAGTTTTCTGGTAATACAGGGATAAATGTTATGCTGTCACCTAGACCTTCTGGAGCTCAGCCTACCACAGTGAAGGAAATTCCAAGCAAGGTGTTGCAAGAACAGCCTTGTCCAGCTAAAGGAACAACTGGTCATAACCATACAGGTGCTTCAATCAGTGGCAGTTCGCCGGCTTCTAAGGCTCAAGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCCATGGCCACTACTTTCAAGAACAATGATGAAGTGGATGGAAAACCCGGTCCTGCTGCACTCTTTGTGAAGGTCAGTATGGACGGTGCTCCCTATCTCAGGAAGGTAGATCTAAGAAGTTATACTACCTATCAGGAACTATCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACCCTAGTATCAGGTCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGATGAGTGAGAGCAAACTGAGGGACCTTCTGCATGGTTCAGAATACGTTCTCACTTATGAAGATAAAGATGGAGACTGGATGCTTGTGGGGGATGTACCATGGGAGATGTTCATTGACACTTGCAGAAGGCTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCTAGGGCCATGGAAAAGTCCAAAAGCAGGAGTTAG 1302 0.4539 MSQGSDTVHKTEHGAMIISAVIIHGLKLLSLSASLSLSSVLHFLGFALFCKEVPQTKTRFSSVSDLPKLASLVCLCIWSVMSPPTVVTEEEGTVASASSQSLDRCSQNGAGLKERNYLGLSDCSSVDSCASTVPNLCDNEKKGNLNLKATELRLGLPGSQSPERDSDLYSLSSTKLDEKPLFPLIPTKDGICSSQKAVGSGNKRGFADIMEGFSQGKFSGNTGINVMLSPRPSGAQPTTVKEIPSKVLQEQPCPAKGTTGHNHTGASISGSSPASKAQVVGWPPIRSFRKNSMATTFKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKMFSCFTLVSGQCGSHGAPGREMMSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCRRLKIMKGSDAIGLAPRAMEKSKSRS* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01224 433 SUPERFAMILY CAD & PB1 domains 309 414 - -
Rops1g01224 433 FunFam Auxin-responsive protein 306 425 - -
Rops1g01224 433 MobiDBLite consensus disorder prediction 251 279 - -
Rops1g01224 433 ProSiteProfiles PB1 domain profile. 311 417 IPR000270 GO:0005515
Rops1g01224 433 MobiDBLite consensus disorder prediction 255 276 - -
Rops1g01224 433 Pfam AUX/IAA family 150 424 IPR033389 -
Rops1g01224 433 Gene3D - 308 426 - -
Rops1g01224 433 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 145 420 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01224 Rops-Chr1 28157054 28163970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01224 315 423 B3 DNA Binding Superfamily AT4G23980 28.440 9.62e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Rops1g01224 AUX_IAA 1.2e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01224 K14484 - gmx:547502 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01224 1 28157054 28163970 Rops1g01224 1 28157054 28163970 ECH
Rops1g01224 1 28157054 28163970 Rops2g02873 2 50432013 50440732 PCT